From bbbb10f97b05dece60cfadca85dd009e2fd7f590 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Tue, 13 Nov 2012 10:04:57 +0000
Subject: [PATCH] fix for ACT
---
uk/ac/sanger/artemis/plot/UserDataAlgorithm.java | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/plot/UserDataAlgorithm.java b/uk/ac/sanger/artemis/plot/UserDataAlgorithm.java
index d3d3af067..c789b88a2 100644
--- a/uk/ac/sanger/artemis/plot/UserDataAlgorithm.java
+++ b/uk/ac/sanger/artemis/plot/UserDataAlgorithm.java
@@ -843,6 +843,8 @@ public class UserDataAlgorithm extends BaseAlgorithm
public void readIndexValues(Entry seqEntry, int start, int end)
{
+ if(start<1)
+ start = 1;
idxReader.readValuesForRange(seqEntry, start, end);
}
@@ -977,7 +979,12 @@ public class UserDataAlgorithm extends BaseAlgorithm
}
catch (IOException e)
{
- logger4j.debug("READ RANGE "+r+" FROM "+reader.getFileName());
+ logger4j.debug("IOException READING RANGE "+r+" FROM "+reader.getFileName());
+ e.printStackTrace();
+ }
+ catch (NumberFormatException e)
+ {
+ logger4j.debug("NumberFormatException READING RANGE "+r+" FROM "+reader.getFileName());
e.printStackTrace();
}
}
--
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