From bc4636e7bf59844f83e207844424d99a3d5a74bd Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 20 Apr 2005 14:54:28 +0000
Subject: [PATCH] use getAllFeatures()
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2402 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/io/SimpleDocumentEntry.java | 14 ++++----------
1 file changed, 4 insertions(+), 10 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java b/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java
index 77e3247de..99490589b 100644
--- a/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java
+++ b/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java
@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java,v 1.9 2005-04-19 14:49:47 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java,v 1.10 2005-04-20 14:54:28 tjc Exp $
*/
package uk.ac.sanger.artemis.io;
@@ -37,7 +37,7 @@ import java.util.Enumeration;
* This class contains the methods common to all DocumentEntry objects.
*
* @author Kim Rutherford <kmr@sanger.ac.uk>
- * @version $Id: SimpleDocumentEntry.java,v 1.9 2005-04-19 14:49:47 tjc Exp $
+ * @version $Id: SimpleDocumentEntry.java,v 1.10 2005-04-20 14:54:28 tjc Exp $
**/
abstract public class SimpleDocumentEntry
@@ -118,7 +118,6 @@ abstract public class SimpleDocumentEntry
LineGroup new_line_group;
- Vector gff_regions = null;
boolean isGFF = false;
while((new_line_group =
@@ -137,13 +136,7 @@ abstract public class SimpleDocumentEntry
(SimpleDocumentFeature)new_line_group;
if(new_line_group instanceof GFFStreamFeature)
- {
isGFF = true;
- if(gff_regions == null)
- gff_regions = new Vector();
-
- gff_regions.add(new_feature);
- }
// try several times because adding the Feature may cause more than
// one exception
@@ -240,7 +233,8 @@ abstract public class SimpleDocumentEntry
// adjust coordinates of features
if(isGFF)
{
- Enumeration gff_features = gff_regions.elements();
+ FeatureVector gff_regions = getAllFeatures();
+ Enumeration gff_features = gff_regions.elements();
while(gff_features.hasMoreElements())
{
GFFStreamFeature feature = (GFFStreamFeature)gff_features.nextElement();
--
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