From bccac533c44f8cc4806fea71e8aa190e2f14b0be Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 21 Sep 2009 15:45:47 +0000
Subject: [PATCH] add picard libs
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11843 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
art | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/art b/art
index a9be46198..4f836e0f6 100755
--- a/art
+++ b/art
@@ -6,7 +6,7 @@
# necessary a symbolic link can be made to this script from
# /usr/local/bin/ or elsewhere.
-# $Header: //tmp/pathsoft/artemis/art,v 1.25 2009-09-21 15:34:45 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/art,v 1.26 2009-09-21 15:45:47 tjc Exp $
# resolve links - $0 may be a link
PRG=$0
@@ -38,7 +38,7 @@ CLASSPATH=$CLASSPATH:$ARTEMIS_HOME/lib/ibatis/ibatis-2.3.4.726.jar:$ARTEMIS_HOME
export CLASSPATH
# picard jars
-CLASSPATH=$CLASSPATH:lib/picard/sam-1.04.jar:lib/picard/picard-1.04.jar
+CLASSPATH=$CLASSPATH:$ARTEMIS_HOME/lib/picard/sam-1.04.jar:$ARTEMIS_HOME/lib/picard/picard-1.04.jar
export CLASSPATH
@@ -112,7 +112,7 @@ then
then
JAVA=java_g
else
- JAVA=java
+ JAVA=/software/pathogen/external/applications/java/java6/bin/java
fi
else
JAVA=$JAVA_VM
--
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