diff --git a/docs/file_menu.sgml b/docs/file_menu.sgml index 3e2b8c0c79b5b56900ece58b4adcbcf8c893e85d..1a2c4d5b768612da868e7731c584c951c7b8dd43 100644 --- a/docs/file_menu.sgml +++ b/docs/file_menu.sgml @@ -44,7 +44,7 @@ This function only reads the feature section of the input file - the sequence </LISTITEM> <LISTITEM> <PARA> - FASTA files and in addition indexed FASTA files can be used. The files are indexed + FASTA files and indexed FASTA files can be used. The files are indexed using <ULINK URL="http://samtools.sourceforge.net/">SAMtools</ULINK> (e.g. <COMMAND>samtools faidx ref.fasta</COMMAND>). A drop down menu of the contigs or chromosomes is provided in the Entry toolbar to select the sequence. Using indexed FASTA files