From c22d41c9579d5a59d737952df53a74b1b1df6ca2 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 18 Feb 2011 12:04:26 +0000
Subject: [PATCH] dialog to show files that have been written to
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15563 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/variant/IOUtils.java | 12 ++++++++++--
1 file changed, 10 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/variant/IOUtils.java b/uk/ac/sanger/artemis/components/variant/IOUtils.java
index 4cce0fcc5..56a9e0331 100644
--- a/uk/ac/sanger/artemis/components/variant/IOUtils.java
+++ b/uk/ac/sanger/artemis/components/variant/IOUtils.java
@@ -177,13 +177,18 @@ class IOUtils
suffix = "."+features.elementAt(0).getIDString()+suffix;
FileWriter writer = null;
+ String fastaFiles = "";
+
for (int i = 0; i < vcfReaders.length; i++)
{
try
{
if(!view)
- writer = new FileWriter(
- getFile(vcfReaders[i].getFileName(), vcfReaders.length, suffix));
+ {
+ File f = getFile(vcfReaders[i].getFileName(), vcfReaders.length, suffix);
+ writer = new FileWriter(f);
+ fastaFiles += f.getAbsolutePath()+"\n";
+ }
for (int j = 0; j < features.size() && (!view || j < MAXIMUM_SELECTED_FEATURES); j++)
{
@@ -237,6 +242,9 @@ class IOUtils
e.printStackTrace();
}
}
+
+ if(!view )
+ new MessageDialog (null, "Saved Files", fastaFiles, false);
}
private static void writeSequence(FileWriter writer, String header, String bases) throws IOException
--
GitLab