From c38b3d2b60015821c92575f18c9cf9f989da6197 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 7 Mar 2013 15:46:01 +0000
Subject: [PATCH] provide auto fix for GFF
---
.../artemis/components/ValidateViewer.java | 33 ++++++++++---------
1 file changed, 18 insertions(+), 15 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/ValidateViewer.java b/uk/ac/sanger/artemis/components/ValidateViewer.java
index f29c89a07..6039c93ba 100644
--- a/uk/ac/sanger/artemis/components/ValidateViewer.java
+++ b/uk/ac/sanger/artemis/components/ValidateViewer.java
@@ -63,25 +63,28 @@ class ValidateViewer extends FileViewer implements EntryGroupChangeListener
update(features);
setVisible(true);
- final JButton fixButton = new JButton("Auto-Fix");
- fixButton.addActionListener(new ActionListener()
+ if( entryGrp == null || GeneUtils.isGFFEntry( entryGrp ) )
{
- public void actionPerformed(ActionEvent e)
+ final JButton fixButton = new JButton("Auto-Fix Boundaries");
+ fixButton.addActionListener(new ActionListener()
{
- try
+ public void actionPerformed(ActionEvent e)
{
- entryGrp.getActionController().startAction();
- for(int i=0; i<features.size(); i++)
- fixBoundary(features.elementAt(i));
+ try
+ {
+ entryGrp.getActionController().startAction();
+ for(int i=0; i<features.size(); i++)
+ fixBoundary(features.elementAt(i));
+ }
+ finally
+ {
+ entryGrp.getActionController().endAction();
+ update(features);
+ }
}
- finally
- {
- entryGrp.getActionController().endAction();
- update(features);
- }
- }
- });
- button_panel.add(fixButton);
+ });
+ button_panel.add(fixButton);
+ }
button_panel.add(showFailedFeatures);
showFailedFeatures.addItemListener(new ItemListener(){
--
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