From c3e4a750ec3bdea97e8c13a519cff55cbcf1fe93 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Wed, 28 Mar 2012 10:22:12 +0100
Subject: [PATCH] temp fix

---
 .../artemis/components/alignment/CRAMReferenceSequenceFile.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java b/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java
index ae2fb2d72..2b9e5741e 100644
--- a/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java
+++ b/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java
@@ -74,7 +74,7 @@ import uk.ac.sanger.artemis.util.OutOfRangeException;
     {
       try
       {
-        if(bamView.isConcatSequences())
+        //if(bamView.isConcatSequences())
         {
           int offset = bamView.getSequenceOffset(contig);
           start += offset;
-- 
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