From c5ee61fbb4546f950fbf0d6765cae5f107ca72c7 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Tue, 20 Sep 2011 12:19:03 +0100
Subject: [PATCH] add isGFFEntry
---
.../components/genebuilder/GeneUtils.java | 18 ++++++++++++++++++
1 file changed, 18 insertions(+)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
index e14ddb2f1..54b3d96af 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
@@ -61,6 +61,7 @@ import uk.ac.sanger.artemis.io.DatabaseInferredFeature;
import uk.ac.sanger.artemis.io.DocumentEntry;
import uk.ac.sanger.artemis.io.EntryInformationException;
import uk.ac.sanger.artemis.io.Feature;
+import uk.ac.sanger.artemis.io.GFFDocumentEntry;
import uk.ac.sanger.artemis.io.GFFStreamFeature;
import uk.ac.sanger.artemis.io.InvalidRelationException;
import uk.ac.sanger.artemis.io.Key;
@@ -957,6 +958,23 @@ public class GeneUtils
return false;
}
+ /**
+ * Given an group of entries determine if they contain a GFF entry
+ * @param entryGroup
+ * @return
+ */
+ public static boolean isGFFEntry(final EntryGroup entryGroup)
+ {
+ final EntryVector entries = entryGroup.getActiveEntries();
+
+ for(int i=0; i<entries.size(); i++)
+ {
+ if( entries.elementAt(i).getEMBLEntry() instanceof GFFDocumentEntry )
+ return true;
+ }
+ return false;
+ }
+
/**
* Given a feature determine if it belongs to a database entry
--
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