From cbc90852a0726a28f5b6f5cb50272fbfc24ecf2a Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 15 Apr 2010 09:02:28 +0000
Subject: [PATCH] filter out match_part features when reading from the database
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13690 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/util/DatabaseDocument.java | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/uk/ac/sanger/artemis/util/DatabaseDocument.java b/uk/ac/sanger/artemis/util/DatabaseDocument.java
index 4630a09e1..59b8bc5b9 100644
--- a/uk/ac/sanger/artemis/util/DatabaseDocument.java
+++ b/uk/ac/sanger/artemis/util/DatabaseDocument.java
@@ -663,7 +663,13 @@ public class DatabaseDocument extends Document
FeatureLoc featureloc = new FeatureLoc();
featureloc.setFeatureBySrcFeatureId(srcFeature);
Feature child = new Feature();
+
+ // ignore match_part (BLAST HSPs)
+ CvTerm cvTerm = getCvTermByCvAndCvTerm("match_part", "sequence");
+
child.setFeatureLoc(featureloc);
+ child.setAnalysis(false);
+ child.setCvTerm(cvTerm);
final List featList = dao.getFeaturesByLocatedOnFeature(child);
final ByteBuffer[] buffers = new ByteBuffer[TYPES.length + 1];
--
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