From cf32b99291bb7a102071f6b762d295cad5580159 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 1 Sep 2010 08:59:17 +0000
Subject: [PATCH] fix for showing new stop codons
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@14691 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/variant/VCFview.java | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/variant/VCFview.java b/uk/ac/sanger/artemis/components/variant/VCFview.java
index 2c90af3ad..dfd7e3312 100644
--- a/uk/ac/sanger/artemis/components/variant/VCFview.java
+++ b/uk/ac/sanger/artemis/components/variant/VCFview.java
@@ -138,9 +138,9 @@ public class VCFview extends JPanel
private boolean showInsertions = true;
private boolean showMultiAlleles = true;
- private boolean markAsNewStop = true;
+ private boolean markAsNewStop = false;
final JCheckBoxMenuItem markNewStops =
- new JCheckBoxMenuItem("Mark new stops within CDS features", markAsNewStop);
+ new JCheckBoxMenuItem("Mark new stops within CDS features", true);
// show variants that do not overlap CDS
private boolean showNonOverlappings = true;
@@ -321,7 +321,7 @@ public class VCFview extends JPanel
final JComboBox combo = new JComboBox(tr[0].getmSeq());
if(tr[0].getmSeq().length > 1)
- combo.addItem("Combine All");
+ combo.addItem("Combine References");
if(chr == null)
this.chr = tr[0].getmSeq()[0];
@@ -334,7 +334,7 @@ public class VCFview extends JPanel
{
public void itemStateChanged(ItemEvent e)
{
- if(combo.getSelectedItem().equals("Combine All"))
+ if(combo.getSelectedItem().equals("Combine References"))
concatSequences = true;
else
{
--
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