From d1e3e762f57f2e87782742b2be9b91f6974b35d7 Mon Sep 17 00:00:00 2001
From: Sascha Steinbiss <ss34@sanger.ac.uk>
Date: Fri, 23 Jan 2015 15:24:51 +0000
Subject: [PATCH] change 'tritryp_uc' to 'eupathdb_uc'
---
uk/ac/sanger/artemis/io/GFFStreamFeature.java | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/GFFStreamFeature.java b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
index 92bbac968..bfe8cbb12 100644
--- a/uk/ac/sanger/artemis/io/GFFStreamFeature.java
+++ b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
@@ -906,7 +906,7 @@ public class GFFStreamFeature extends SimpleDocumentFeature implements
Set<String> set = new HashSet<String>();
if (values != null && values.size() > 0) {
for (int value_index = 0; value_index < values.size(); ++value_index) {
- String regex = "tritryp_uc[:=]\"?([a-zA-Z0-9]+)";
+ String regex = "eupathdb_uc[:=]\"?([a-zA-Z0-9]+)";
Pattern pattern = Pattern.compile(regex, Pattern.CASE_INSENSITIVE);
Matcher matcher = pattern.matcher(values.elementAt(value_index));
while (matcher.find()) {
@@ -949,8 +949,8 @@ public class GFFStreamFeature extends SimpleDocumentFeature implements
// also put TriTryp UC numbers into separate attribute
abuf.setClone("history", "tritryp_uc");
- abuf.setAggregator("tritryp_uc", ucProc);
- abuf.setGlue("tritryp_uc", ",");
+ abuf.setAggregator("eupathdb_uc", ucProc);
+ abuf.setGlue("eupathdb_uc", ",");
// class
abuf.setAggregator("class", classProc);
--
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