From d22f441d5ddd044ef3a05c7c20a67d4ea01962be Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 9 Jan 2009 16:17:45 +0000
Subject: [PATCH] add makeGeneEntry
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9706 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../components/genebuilder/GeneEdit.java | 49 ++++++++++++++++++-
1 file changed, 48 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java b/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java
index f8ca2e10e..5741255a9 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java
@@ -64,6 +64,7 @@ import uk.ac.sanger.artemis.io.GFFStreamFeature;
import uk.ac.sanger.artemis.io.PartialSequence;
import uk.ac.sanger.artemis.sequence.NoSequenceException;
import uk.ac.sanger.artemis.util.DatabaseDocument;
+import uk.ac.sanger.artemis.util.InputStreamProgressListener;
import uk.ac.sanger.artemis.util.OutOfRangeException;
import uk.ac.sanger.artemis.components.Splash;
import uk.ac.sanger.artemis.components.SwingWorker;
@@ -280,7 +281,53 @@ public class GeneEdit
return mbar;
}
- public static void showGeneEditor(final String schema,
+ /**
+ * Make an entry for a single gene.
+ * @param organism
+ * @param uniquename
+ * @param doc
+ * @param stream_progress_listener
+ * @return
+ */
+ public static DatabaseDocumentEntry makeGeneEntry(final String organism,
+ final String uniquename,
+ final DatabaseDocument doc,
+ final InputStreamProgressListener stream_progress_listener)
+ {
+ DatabaseDocumentEntry db_entry = null;
+ DatabaseDocument newdoc = new DatabaseDocument(doc,
+ uniquename, organism, true, stream_progress_listener);
+ newdoc.setLazyFeatureLoad(false);
+
+ try
+ {
+ db_entry = new DatabaseDocumentEntry(newdoc, null);
+ }
+ catch(EntryInformationException e)
+ {
+ e.printStackTrace();
+ }
+ catch(IOException e)
+ {
+ e.printStackTrace();
+ }
+ catch(NullPointerException npe)
+ {
+ JOptionPane.showMessageDialog(null, organism+":"+uniquename+
+ " not found!", "Warning", JOptionPane.WARNING_MESSAGE);
+ }
+ return db_entry;
+ }
+
+
+
+ /**
+ *
+ * @param organism
+ * @param uniqueName
+ * @param dbentry
+ */
+ public static void showGeneEditor(final String organism,
final String uniqueName,
final DatabaseDocumentEntry dbentry)
{
--
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