From d2c4be40828c3d49e70e8a5fd604b310256ad219 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Mon, 19 Dec 2011 15:25:59 +0000
Subject: [PATCH] fix for filtering by sample
---
uk/ac/sanger/artemis/components/variant/VCFFilter.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/variant/VCFFilter.java b/uk/ac/sanger/artemis/components/variant/VCFFilter.java
index 811db7144..e1a06ee2d 100644
--- a/uk/ac/sanger/artemis/components/variant/VCFFilter.java
+++ b/uk/ac/sanger/artemis/components/variant/VCFFilter.java
@@ -550,7 +550,7 @@ public class VCFFilter extends JFrame
if(sampleIndex > -1) // look at a specific sample
{
- if( !recFilter.pass(record, samples[sampleIndex].split(","), vcfReader))
+ if(samples[sampleIndex] == null || !recFilter.pass(record, samples[sampleIndex].split(","), vcfReader))
return false;
}
else // look at all samples
--
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