From d6352059915218403fff44e20deab4e944824a48 Mon Sep 17 00:00:00 2001 From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04> Date: Mon, 26 Feb 2007 15:13:20 +0000 Subject: [PATCH] more qualifiers git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@5507 ee4ac58c-ac51-4696-9907-e4b3aa274f04 --- etc/feature_keys_gff | 178 ++++++++++++++++++++-------------------- etc/qualifier_types_gff | 2 + 2 files changed, 91 insertions(+), 89 deletions(-) diff --git a/etc/feature_keys_gff b/etc/feature_keys_gff index d90b420ac..04e97529e 100644 --- a/etc/feature_keys_gff +++ b/etc/feature_keys_gff @@ -5,94 +5,94 @@ # # key Qualifiers (@=mandatory) # ======= ======================== -region ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -contig ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -supercontig ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -chromosome ID Name Alias Parent Note note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -gene ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -CDS ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score results note job -polypeptide ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score mass isoelectric charge source -pseudogene ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -intron ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -exon ID Name Alias Parent Note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score -three_prime_UTR ID Alias Parent Note systematic_id db_xref note -five_prime_UTR ID Alias Parent Note systematic_id db_xref note -transcript -primary_transcript ID Name Alias Parent Note db_xref product note controlled_curation -tRNA ID Name Alias Parent Note db_xref product note controlled_curation -rRNA ID Name Alias Parent Note db_xref product note controlled_curation -mRNA ID Name Alias Parent Note db_xref product note controlled_curation -snRNA ID Name Alias Parent Note db_xref product note controlled_curation -scRNA ID Name Alias Parent Note db_xref product note controlled_curation -snoRNA ID Name Alias Parent Note db_xref product note controlled_curation -polypeptide_domain ID Name Alias Parent Note -signal_peptide ID Name Alias Parent Note -match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term -nucleotide_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term gff_source gff_seqname score -translated_nucleotide_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term -protein_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term cluster gff_source gff_seqname score -sequence_difference ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term -direct_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term -inverted_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term -dispersed_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term -repeat_family ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term gff_source gff_seqname score -transposable_element ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term -binding_site ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term +region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +contig ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +supercontig ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +chromosome ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +gene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +CDS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score results note job +polypeptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score mass isoelectric charge source +pseudogene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +intron ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +exon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score +three_prime_UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified systematic_id db_xref note +five_prime_UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified systematic_id db_xref note +transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +primary_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified db_xref product note controlled_curation +tRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified db_xref product note controlled_curation +rRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified db_xref product note controlled_curation +mRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified db_xref product note controlled_curation +snRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified db_xref product note controlled_curation +scRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified db_xref product note controlled_curation +snoRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified db_xref product note controlled_curation +polypeptide_domain ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +signal_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +nucleotide_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified gff_source gff_seqname score +translated_nucleotide_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +protein_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified cluster gff_source gff_seqname score +sequence_difference ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +direct_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +inverted_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +dispersed_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified +repeat_family ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified gff_source gff_seqname score +transposable_element ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term feature_id timelastmodified +binding_site ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term feature_id timelastmodified -- ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term EC_number PCR_conditions allele anticodon bound_moiety cell_line cell_type chromosome citation clone clone_lib codon codon_start cons_splice country cultivar db_xref dev_stage direction ecotype environmental_sa evidence exception focus frequency function gene germline haplotype insertion_seq isolate isolation_source lab_host label locus_tag macronuclear map mod_base mol_type note number organelle organism partial phenotype plasmid pop_variant product protein_id proviral pseudo rearranged replace rpt_family rpt_type rpt_unit segment sequenced_mol serotype serovar sex specific_host specimen_voucher standard_name strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transl_except transl_table translation transposon usedin variety virion --10_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin --35_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin -3'UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin -3'clip ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin -5'UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin -5'clip ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin -CAAT_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial usedin -C_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin -D-loop ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial usedin -D_segment ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin -GC_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial usedin -J_segment ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin -LTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin -N_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin -RBS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin -STS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin -S_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin -TATA_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial usedin -V_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin -V_segment ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin -attenuator ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note operon partial phenotype usedin -conflict ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @citation allele db_xref evidence gene label locus_tag map note replace usedin -enhancer ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin -gap ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @estimated_length -iDNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note number partial standard_name usedin -mat_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term EC_number allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin -misc_RNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin -misc_binding ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial usedin -misc_difference ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation clone db_xref evidence gene label locus_tag map note partial phenotype replace standard_name usedin -misc_feature ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note number partial phenotype product pseudo standard_name usedin -misc_recomb ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note organism partial standard_name usedin -misc_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype standard_name usedin -misc_structure ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin -modified_base ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @mod_base allele citation db_xref evidence frequency gene label locus_tag map note usedin -old_sequence ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @citation allele db_xref evidence gene label locus_tag map note partial replace usedin -operon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @operon allele citation db_xref evidence function label map note phenotype pseudo standard_name usedin -oriT ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele bound_moiety citation db_xref direction evidence gene label locus_tag map note rpt_family rpt_type rpt_unit standard_name usedin -polyA_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial usedin -polyA_site ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note usedin -precursor_RNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin -prim_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin -primer_bind ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term PCR_conditions allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin -promoter ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype pseudo standard_name usedin -protein_bind ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin -rep_origin ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref direction evidence gene label locus_tag map note partial standard_name usedin -repeat_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene insertion_seq label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name transposon usedin -repeat_unit ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note partial rpt_family rpt_type rpt_unit usedin -satellite ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name usedin -sig_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin -source ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term @organism cell_line cell_type chloroplast chromoplast chromosome citation clone clone_lib country cultivar cyanelle db_xref dev_stage ecotype environmental_sample evidence focus frequency germline haplotype insertion_seq isolate isolation_source kinetoplast lab_host label macronuclear map mitochondrion mol_type note organelle plasmid pop_variant proviral rearranged segment sequenced_mol serotype serovar sex specific_host specimen_voucher strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transposon usedin variety virion -stem_loop ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin -terminator ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note operon partial standard_name usedin -transit_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin -unsure ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence gene label locus_tag map note replace usedin -variation ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term allele citation db_xref evidence frequency gene label locus_tag map note partial phenotype product replace standard_name usedin +- ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified EC_number PCR_conditions allele anticodon bound_moiety cell_line cell_type chromosome citation clone clone_lib codon codon_start cons_splice country cultivar db_xref dev_stage direction ecotype environmental_sa evidence exception focus frequency function gene germline haplotype insertion_seq isolate isolation_source lab_host label locus_tag macronuclear map mod_base mol_type note number organelle organism partial phenotype plasmid pop_variant product protein_id proviral pseudo rearranged replace rpt_family rpt_type rpt_unit segment sequenced_mol serotype serovar sex specific_host specimen_voucher standard_name strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transl_except transl_table translation transposon usedin variety virion +-10_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin +-35_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin +3'UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin +3'clip ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin +5'UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin +5'clip ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin +CAAT_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin +C_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin +D-loop ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin +D_segment ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin +GC_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin +J_segment ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin +LTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin +N_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin +RBS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin +STS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin +S_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin +TATA_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin +V_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin +V_segment ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin +attenuator ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note operon partial phenotype usedin +conflict ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @citation allele db_xref evidence gene label locus_tag map note replace usedin +enhancer ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin +gap ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @estimated_length +iDNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note number partial standard_name usedin +mat_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified EC_number allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin +misc_RNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin +misc_binding ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial usedin +misc_difference ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation clone db_xref evidence gene label locus_tag map note partial phenotype replace standard_name usedin +misc_feature ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note number partial phenotype product pseudo standard_name usedin +misc_recomb ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note organism partial standard_name usedin +misc_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype standard_name usedin +misc_structure ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin +modified_base ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @mod_base allele citation db_xref evidence frequency gene label locus_tag map note usedin +old_sequence ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @citation allele db_xref evidence gene label locus_tag map note partial replace usedin +operon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @operon allele citation db_xref evidence function label map note phenotype pseudo standard_name usedin +oriT ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele bound_moiety citation db_xref direction evidence gene label locus_tag map note rpt_family rpt_type rpt_unit standard_name usedin +polyA_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin +polyA_site ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note usedin +precursor_RNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin +prim_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin +primer_bind ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified PCR_conditions allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin +promoter ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype pseudo standard_name usedin +protein_bind ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin +rep_origin ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref direction evidence gene label locus_tag map note partial standard_name usedin +repeat_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene insertion_seq label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name transposon usedin +repeat_unit ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial rpt_family rpt_type rpt_unit usedin +satellite ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name usedin +sig_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin +source ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @organism cell_line cell_type chloroplast chromoplast chromosome citation clone clone_lib country cultivar cyanelle db_xref dev_stage ecotype environmental_sample evidence focus frequency germline haplotype insertion_seq isolate isolation_source kinetoplast lab_host label macronuclear map mitochondrion mol_type note organelle plasmid pop_variant proviral rearranged segment sequenced_mol serotype serovar sex specific_host specimen_voucher strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transposon usedin variety virion +stem_loop ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin +terminator ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note operon partial standard_name usedin +transit_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin +unsure ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note replace usedin +variation ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence frequency gene label locus_tag map note partial phenotype product replace standard_name usedin diff --git a/etc/qualifier_types_gff b/etc/qualifier_types_gff index 9843fb98e..7e244333c 100644 --- a/etc/qualifier_types_gff +++ b/etc/qualifier_types_gff @@ -36,6 +36,7 @@ Target no text Gap no text Derives_from no text Dbxref no "text" +feature_id no number 1 99999999 colour no text color no text mass no text @@ -124,6 +125,7 @@ strain no "text" sub_clone no "text" sub_species no "text" sub_strain no "text" +timelastmodified no text tissue_lib no "text" tissue_type no "text" transgenic no "text" -- GitLab