From d7ee698cb49088e3cdc5910925b5681b1019dfcb Mon Sep 17 00:00:00 2001
From: tcarver <tjc@sanger.ac.uk>
Date: Wed, 31 Jul 2013 15:10:51 +0100
Subject: [PATCH] use INFILE command line option
---
etc/run_clustalx | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/etc/run_clustalx b/etc/run_clustalx
index 0b9dd6a12..d9ade6d1c 100755
--- a/etc/run_clustalx
+++ b/etc/run_clustalx
@@ -36,6 +36,6 @@ perl -pne 'if (/^>(\S+)/) {
}
}' $temp_file_name > $temp_file_name.processed
-clustalx $temp_file_name.processed
+clustalx -INFILE=$temp_file_name.processed
exit 0
--
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