From e1395d0773c28848e436a9c5650d6b7a862d8901 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 7 Mar 2008 14:34:08 +0000
Subject: [PATCH] speed up getFeatureDbXRefsBySrcFeature
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7212 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
artemis_sqlmap/FeatureDbXRef.xml | 19 +++++++++----------
1 file changed, 9 insertions(+), 10 deletions(-)
diff --git a/artemis_sqlmap/FeatureDbXRef.xml b/artemis_sqlmap/FeatureDbXRef.xml
index 0b93402e8..f3455ea29 100644
--- a/artemis_sqlmap/FeatureDbXRef.xml
+++ b/artemis_sqlmap/FeatureDbXRef.xml
@@ -58,18 +58,17 @@
<select id="getFeatureDbXRefsBySrcFeature"
parameterClass="org.gmod.schema.sequence.Feature"
resultMap="map-feature-dbxref">
- SELECT db.name, dbx.accession, dbx.version, dbx.description,
- dbx_f.feature_id, dbx_f.is_current
- FROM feature_dbxref dbx_f
- LEFT JOIN dbxref dbx ON dbx.dbxref_id=dbx_f.dbxref_id
- LEFT JOIN db ON db.db_id=dbx.db_id
- LEFT JOIN feature f ON dbx_f.feature_id=f.feature_id
- WHERE dbx_f.feature_id IN
- (SELECT feature_id FROM featureloc fl WHERE srcfeature_id=$featureId$
+ SELECT db.name, dbx.accession, dbx.version, dbx.description,
+ dbx_f.feature_id, dbx_f.is_current
+ FROM featureloc fl
+ RIGHT JOIN feature_dbxref dbx_f ON fl.feature_id = dbx_f.feature_id
+ LEFT JOIN dbxref dbx ON dbx.dbxref_id=dbx_f.dbxref_id
+ LEFT JOIN db ON db.db_id=dbx.db_id
+ WHERE srcfeature_id = $featureId$
<isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND">
<![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
- </isGreaterThan>)
- ORDER BY f.type_id, uniquename
+ </isGreaterThan>
+ ORDER BY fl.feature_id, dbx.accession , db.name;
</select>
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