diff --git a/artemis_sqlmap/Feature.xml b/artemis_sqlmap/Feature.xml
index 27b9a971bf960cee48cd352772b23e7f04aa3936..0feae18ab0d5809fb94b4eaefc96acde5fa0b85b 100644
--- a/artemis_sqlmap/Feature.xml
+++ b/artemis_sqlmap/Feature.xml
@@ -9,25 +9,7 @@
<typeAlias alias="Feature"
type="org.gmod.schema.sequence.Feature"/>
-
- <typeAlias alias="FeatureLoc"
- type="org.gmod.schema.sequence.FeatureLoc"/>
-
- <typeAlias alias="FeatureProp"
- type="org.gmod.schema.sequence.FeatureProp"/>
-
- <typeAlias alias="FeatureRelationship"
- type="org.gmod.schema.sequence.FeatureRelationship"/>
-
- <typeAlias alias="FeatureCvTerm"
- type="org.gmod.schema.sequence.FeatureCvTerm"/>
-
- <typeAlias alias="FeatureCvTermProp"
- type="org.gmod.schema.sequence.FeatureCvTermProp"/>
-
- <typeAlias alias="FeatureCvTermDbXRef"
- type="org.gmod.schema.sequence.FeatureCvTermDbXRef"/>
-
+
<parameterMap id="schema-cvlist"
class="Feature">
<parameter property="schema" javaType="java.lang.String"/>
@@ -39,7 +21,7 @@
<result property="timeLastModified" column="timelastmodified"/>
<result property="featureId" column="id"/>
<result property="featureRelationshipsForSubjectId"
- resultMap="Feature.feature_relationship" />
+ resultMap="FeatureRelationship.feature_relationship" />
<!--
<result property="featureRelationship.featureByObjectId.featureId" column="object_id"/>
<result property="featureRelationship.cvTerm.cvTermId" column="relation_type_id"/>
@@ -51,7 +33,7 @@
<result property="featureLoc.phase" column="phase"/>
<result property="uniqueName" column="uniquename"/>
<result property="cvTerm.cvTermId" column="type_id"/>
- <result property="featureProps" resultMap="Feature.featureprop" />
+ <result property="featureProps" resultMap="FeatureProp.featureprop" />
<!--
<result property="featureprop.cvTerm.cvTermId" column="prop_type_id" nullValue="0"/>
<result property="featureprop.value" column="value"/>
@@ -95,159 +77,8 @@
<result property="featureId" column="feature_id"/>
<result property="cvTerm.cvTermId" column="type_id"/>
</resultMap>
-
- <resultMap id="select-featureprop"
- class="FeatureProp">
- <result property="value" column="value" />
- <result property="rank" column="rank" />
- <result property="cvTerm" column="type_id" select="selectCvterm" />
- </resultMap>
-
- <resultMap id="featureprop"
- class="FeatureProp">
- <result property="value" column="value" />
- <result property="rank" column="prop_rank" />
- <result property="cvTerm.cvTermId" column="prop_type_id" />
- </resultMap>
-
- <resultMap id="feature_relationship"
- class="FeatureRelationship">
- <result property="featureByObjectId.featureId" column="object_id"/>
- <result property="cvTerm.cvTermId" column="relation_type_id"/>
- <result property="rank" column="rank"/>
- <result property="value" column="relation_value" />
- </resultMap>
-
- <resultMap id="select-relationship"
- class="FeatureRelationship">
- <result property="featureBySubjectId.featureId" column="subject_id" />
- <result property="featureByObjectId.featureId" column="object_id" />
- <result property="value" column="value" />
- <result property="rank" column="rank" />
- <result property="cvTerm" column="type_id" select="selectCvterm" />
- </resultMap>
-
- <resultMap id="select-location"
- class="FeatureLoc">
- <result property="featureBySrcFeatureId.featureId" column="srcfeature_id" nullValue="-999" />
- <result property="fmin" column="fmin" nullValue="-999" />
- <result property="fmax" column="fmax" nullValue="-999" />
- <result property="strand" column="strand" nullValue="0" />
- <result property="phase" column="phase" nullValue="0" />
- <result property="residueInfo" column="residue_info"/>
- <result property="locGroup" column="locgroup"/>
- <result property="rank" column="rank"/>
- </resultMap>
-
- <resultMap id="feature_cvtermprop" class="FeatureCvTermProp">
- <result property="cvTerm.cvTermId" column="type_id" />
- <result property="value" column="value" />
- <result property="rank" column="rank" />
- </resultMap>
-
- <resultMap id="select-featurecvterm" class="FeatureCvTerm"
- groupBy="featureCvTermId">
- <result property="featureCvTermId" column="feature_cvterm_id" />
- <result property="feature.featureId" column="feature_id" />
- <result property="cvTerm.cvTermId" column="cvterm_id" />
- <result property="cvTerm.name" column="cvterm_name" />
- <result property="cvTerm.cv.name" column="cv_name" />
- <result property="not" column="is_not" />
- <result property="rank" column="fc_rank" />
- <result property="featureCvTermProps" resultMap="Feature.feature_cvtermprop" />
- <result property="pub.pubId" column="pub_id" />
- <result property="pub.uniqueName" column="uniquename" />
- <result property="cvTerm.dbXRef.accession" column="accession" />
- <result property="cvTerm.dbXRef.db.name" column="name" />
- <!-- <result property="pub" column="pub_id" select="selectPub" /> -->
- </resultMap>
-
- <resultMap id="select-featurecvtermdbxref" class="FeatureCvTermDbXRef"
- groupBy="featureCvTermId">
- <result property="featureCvTerm.featureCvTermId" column="feature_cvterm_id" />
- <result property="dbXRef.accession" column="accession"/>
- <result property="dbXRef.version" column="version"/>
- <result property="dbXRef.description" column="description"/>
- <result property="dbXRef.db.name" column="name"/>
- </resultMap>
<!-- SQL -->
-
- <!-- select featureprops e.g. for lazy loading -->
- <select id="selectFeatureProp" resultMap="select-featureprop">
- SELECT type_id, value, rank
- FROM featureprop
- WHERE feature_id=#feature_id#
- </select>
-
- <!-- select feature_relationship -->
- <select id="getFeatureRelationship" resultMap="select-relationship">
- SELECT subject_id, object_id, type_id, value, rank
- FROM feature_relationship
- WHERE
- <dynamic>
- <isNotNull property="object_id">
- object_id=#object_id#
- </isNotNull>
- <isNotNull property="subject_id">
- subject_id=#subject_id#
- </isNotNull>
- </dynamic>
- </select>
-
- <!-- select featureloc -->
- <select id="getFeatureLoc" resultMap="select-location">
- SELECT srcfeature_id, fmin, fmax, strand, phase, residue_info, locgroup, rank
- FROM featureloc
- WHERE featureloc.feature_id=#id#
- </select>
-
-
- <!-- select feature_cvterm -->
- <select id="getFeatureCvTermsByFeature" parameterClass="Feature"
- resultMap="select-featurecvterm">
- SELECT
- fc.feature_id,
- fc.feature_cvterm_id,
- fc.cvterm_id,
- fc.rank AS fc_rank,
- fc.is_not,
- fcp.type_id, fcp.value, fcp.rank,
- cvterm.name AS cvterm_name,
- cv.name AS cv_name,
- pub.pub_id,
- pub.uniquename,
- db.name,
- dbxref.accession
- FROM feature_cvterm fc
- LEFT JOIN feature_cvtermprop fcp ON fc.feature_cvterm_id=fcp.feature_cvterm_id
- LEFT JOIN cvterm ON cvterm.cvterm_id=fc.cvterm_id
- LEFT JOIN cv ON cvterm.cv_id=cv.cv_id
- LEFT JOIN pub ON fc.pub_id=pub.pub_id
- LEFT JOIN dbxref ON cvterm.dbxref_id=dbxref.dbxref_id
- LEFT JOIN db ON dbxref.db_id=db.db_id
- <dynamic>
- <isNotNull property="uniqueName" prepend="WHERE">
- feature_id=(SELECT feature_id FROM feature WHERE uniquename=#uniqueName#)
- </isNotNull>
- </dynamic>
- ORDER BY fc.feature_cvterm_id, fc.rank, type_id, fcp.rank;
- </select>
-
- <select id="getFeatureCvTermDbXRef" parameterClass="Feature"
- resultMap="select-featurecvtermdbxref">
- SELECT feature_cvterm_id, dbx.*, db.name
- FROM feature_cvterm_dbxref fcd
- LEFT JOIN dbxref dbx ON dbx.dbxref_id=fcd.dbxref_id
- LEFT JOIN db ON db.db_id=dbx.db_id
- <dynamic>
- <isNotNull property="uniqueName">
- LEFT JOIN feature_cvterm fc ON fcd.feature_cvterm_id=fc.feature_cvterm_id
- WHERE
- feature_id=(SELECT feature_id FROM feature WHERE uniquename=#uniqueName#)
- </isNotNull>
- </dynamic>
- </select>
<!-- get feature -->
@@ -359,22 +190,6 @@
<!-- WRITE BACK METHODS -->
<!-- UPDATE -->
- <update id="updateFeatureLoc"
- parameterClass="FeatureLoc">
- UPDATE featureloc
- SET fmin=$fmin$, fmax=$fmax$, rank=$rank$, strand=$strand$
- <isNotNull property="phase">
- , phase=$phase$
- </isNotNull>
- <isNull property="phase">
- , phase=NULL
- </isNull>
- WHERE
- <isNotNull property="featureByFeatureId.uniqueName">
- feature_id=(SELECT feature_id FROM feature WHERE uniquename=#featureByFeatureId.uniqueName#)
- </isNotNull>
- </update>
-
<update id="updateFeature"
parameterClass="Feature">
UPDATE feature
@@ -387,36 +202,9 @@
</isNotNull>
WHERE feature_id=$featureId$
</update>
-
- <update id="updateFeatureProp"
- parameterClass="FeatureProp">
- UPDATE featureprop
- SET value=#value#
- WHERE rank=$rank$ AND type_id=$cvTerm.cvTermId$ AND
- feature_id=(SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#)
- </update>
-
- <update id="updateFeatureRelationshipsForSubjectId"
- parameterClass="FeatureRelationship">
- UPDATE feature_relationship
- SET
- rank=$rank$, type_id=$cvTerm.cvTermId$
- WHERE subject_id=
- ( SELECT feature_id FROM feature WHERE uniquename=#featureBySubjectId.uniqueName# )
- AND object_id=
- ( SELECT feature_id FROM feature WHERE uniquename=#featureByObjectId.uniqueName# )
- </update>
+
<!-- INSERT -->
- <insert id="insertFeatureProp"
- parameterClass="FeatureProp">
- INSERT INTO featureprop
- ( feature_id, type_id, value, rank )
- VALUES
- ( (SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#),
- $cvTerm.cvTermId$, #value#, $rank$ )
- </insert>
-
<insert id="insertFeature"
parameterClass="Feature">
INSERT INTO feature
@@ -428,59 +216,9 @@
#uniqueName#,
$cvTerm.cvTermId$ )
</insert>
-
- <insert id="insertFeatureLoc"
- parameterClass="Feature">
- INSERT INTO featureloc
- ( featureloc_id, feature_id, srcfeature_id, fmin, fmax, strand
- <isNotNull property="featureLoc.phase">
- , phase
- </isNotNull>
- )
- VALUES
- ( nextval('featureloc_featureloc_id_seq'),
- $featureId$,
- $featureLoc.featureBySrcFeatureId.featureId$,
- $featureLoc.fmin$,
- $featureLoc.fmax$,
- $featureLoc.strand$
- <isNotNull property="featureLoc.phase">
- , $featureLoc.phase$
- </isNotNull>
- )
- </insert>
-
- <insert id="insertFeatureRelationship"
- parameterClass="FeatureRelationship">
- INSERT INTO feature_relationship
- ( subject_id, object_id, type_id )
- VALUES
- ( (SELECT feature_id FROM feature WHERE uniquename=#featureBySubjectId.uniqueName#),
- (SELECT feature_id FROM feature WHERE uniquename=#featureByObjectId.uniqueName#),
- $cvTerm.cvTermId$ )
- </insert>
<!-- DELETE -->
-
- <delete id="deleteFeatureProp"
- parameterClass="FeatureProp">
- DELETE FROM featureprop
- WHERE
- <isNotNull property="feature.uniqueName">
- feature_id=
- (SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#)
- AND
- </isNotNull>
- <isGreaterThan property="rank" compareValue="-1">
- rank=$rank$ AND
- </isGreaterThan>
- <isNotNull property="value">
- value=#value# AND
- </isNotNull>
- type_id=$cvTerm.cvTermId$
- </delete>
-
<delete id="deleteFeature"
parameterClass="Feature">
DELETE FROM feature
diff --git a/artemis_sqlmap/FeatureCvTerm.xml b/artemis_sqlmap/FeatureCvTerm.xml
new file mode 100644
index 0000000000000000000000000000000000000000..29d98339a9f85c3cccf7704195dbe574e7d72ae4
--- /dev/null
+++ b/artemis_sqlmap/FeatureCvTerm.xml
@@ -0,0 +1,59 @@
+<!DOCTYPE sqlMap
+ PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
+ "http://ibatis.apache.org/dtd/sql-map-2.dtd">
+
+
+<sqlMap namespace="FeatureCvTerm">
+
+ <typeAlias alias="FeatureCvTerm"
+ type="org.gmod.schema.sequence.FeatureCvTerm"/>
+
+ <resultMap id="select-featurecvterm" class="FeatureCvTerm"
+ groupBy="featureCvTermId">
+ <result property="featureCvTermId" column="feature_cvterm_id" />
+ <result property="feature.featureId" column="feature_id" />
+ <result property="cvTerm.cvTermId" column="cvterm_id" />
+ <result property="cvTerm.name" column="cvterm_name" />
+ <result property="cvTerm.cv.name" column="cv_name" />
+ <result property="not" column="is_not" />
+ <result property="rank" column="fc_rank" />
+ <result property="featureCvTermProps" resultMap="FeatureCvTermProp.feature_cvtermprop" />
+ <result property="pub.pubId" column="pub_id" />
+ <result property="pub.uniqueName" column="uniquename" />
+ <result property="cvTerm.dbXRef.accession" column="accession" />
+ <result property="cvTerm.dbXRef.db.name" column="name" />
+ <!-- <result property="pub" column="pub_id" select="selectPub" /> -->
+ </resultMap>
+
+ <!-- select feature_cvterm -->
+ <select id="getFeatureCvTermsByFeature" parameterClass="Feature"
+ resultMap="select-featurecvterm">
+ SELECT
+ fc.feature_id,
+ fc.feature_cvterm_id,
+ fc.cvterm_id,
+ fc.rank AS fc_rank,
+ fc.is_not,
+ fcp.type_id, fcp.value, fcp.rank,
+ cvterm.name AS cvterm_name,
+ cv.name AS cv_name,
+ pub.pub_id,
+ pub.uniquename,
+ db.name,
+ dbxref.accession
+ FROM feature_cvterm fc
+ LEFT JOIN feature_cvtermprop fcp ON fc.feature_cvterm_id=fcp.feature_cvterm_id
+ LEFT JOIN cvterm ON cvterm.cvterm_id=fc.cvterm_id
+ LEFT JOIN cv ON cvterm.cv_id=cv.cv_id
+ LEFT JOIN pub ON fc.pub_id=pub.pub_id
+ LEFT JOIN dbxref ON cvterm.dbxref_id=dbxref.dbxref_id
+ LEFT JOIN db ON dbxref.db_id=db.db_id
+ <dynamic>
+ <isNotNull property="uniqueName" prepend="WHERE">
+ feature_id=(SELECT feature_id FROM feature WHERE uniquename=#uniqueName#)
+ </isNotNull>
+ </dynamic>
+ ORDER BY fc.feature_cvterm_id, fc.rank, type_id, fcp.rank;
+ </select>
+
+</sqlMap>
\ No newline at end of file
diff --git a/artemis_sqlmap/FeatureCvTermDbXRef.xml b/artemis_sqlmap/FeatureCvTermDbXRef.xml
new file mode 100644
index 0000000000000000000000000000000000000000..e16cc5a0c473f26512a1b61cb9a42a8fafaf5274
--- /dev/null
+++ b/artemis_sqlmap/FeatureCvTermDbXRef.xml
@@ -0,0 +1,35 @@
+<!DOCTYPE sqlMap
+ PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
+ "http://ibatis.apache.org/dtd/sql-map-2.dtd">
+
+
+<sqlMap namespace="FeatureCvTermDbXRef">
+
+ <typeAlias alias="FeatureCvTermDbXRef"
+ type="org.gmod.schema.sequence.FeatureCvTermDbXRef"/>
+
+ <resultMap id="select-featurecvtermdbxref" class="FeatureCvTermDbXRef"
+ groupBy="featureCvTermId">
+ <result property="featureCvTerm.featureCvTermId" column="feature_cvterm_id" />
+ <result property="dbXRef.accession" column="accession"/>
+ <result property="dbXRef.version" column="version"/>
+ <result property="dbXRef.description" column="description"/>
+ <result property="dbXRef.db.name" column="name"/>
+ </resultMap>
+
+ <select id="getFeatureCvTermDbXRef" parameterClass="Feature"
+ resultMap="select-featurecvtermdbxref">
+ SELECT feature_cvterm_id, dbx.*, db.name
+ FROM feature_cvterm_dbxref fcd
+ LEFT JOIN dbxref dbx ON dbx.dbxref_id=fcd.dbxref_id
+ LEFT JOIN db ON db.db_id=dbx.db_id
+ <dynamic>
+ <isNotNull property="uniqueName">
+ LEFT JOIN feature_cvterm fc ON fcd.feature_cvterm_id=fc.feature_cvterm_id
+ WHERE
+ feature_id=(SELECT feature_id FROM feature WHERE uniquename=#uniqueName#)
+ </isNotNull>
+ </dynamic>
+ </select>
+
+</sqlMap>
\ No newline at end of file
diff --git a/artemis_sqlmap/FeatureCvTermProp.xml b/artemis_sqlmap/FeatureCvTermProp.xml
new file mode 100644
index 0000000000000000000000000000000000000000..a046fa8fec37cbc76b2f9fce7a0c4d6698be6c8e
--- /dev/null
+++ b/artemis_sqlmap/FeatureCvTermProp.xml
@@ -0,0 +1,16 @@
+<!DOCTYPE sqlMap
+ PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
+ "http://ibatis.apache.org/dtd/sql-map-2.dtd">
+
+
+<sqlMap namespace="FeatureCvTermProp">
+
+ <typeAlias alias="FeatureCvTermProp"
+ type="org.gmod.schema.sequence.FeatureCvTermProp"/>
+
+ <resultMap id="feature_cvtermprop" class="FeatureCvTermProp">
+ <result property="cvTerm.cvTermId" column="type_id" />
+ <result property="value" column="value" />
+ <result property="rank" column="rank" />
+ </resultMap>
+</sqlMap>
\ No newline at end of file
diff --git a/artemis_sqlmap/FeatureLoc.xml b/artemis_sqlmap/FeatureLoc.xml
new file mode 100644
index 0000000000000000000000000000000000000000..56647ca73cafd5c72afd432ea8926acb8586d315
--- /dev/null
+++ b/artemis_sqlmap/FeatureLoc.xml
@@ -0,0 +1,74 @@
+<?xml version="1.0" encoding="UTF-8" ?>
+
+<!DOCTYPE sqlMap
+ PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
+ "http://ibatis.apache.org/dtd/sql-map-2.dtd">
+
+
+<sqlMap namespace="FeatureLoc">
+
+
+
+ <typeAlias alias="FeatureLoc"
+ type="org.gmod.schema.sequence.FeatureLoc"/>
+
+ <resultMap id="select-location"
+ class="FeatureLoc">
+ <result property="featureBySrcFeatureId.featureId" column="srcfeature_id" nullValue="-999" />
+ <result property="fmin" column="fmin" nullValue="-999" />
+ <result property="fmax" column="fmax" nullValue="-999" />
+ <result property="strand" column="strand" nullValue="0" />
+ <result property="phase" column="phase" nullValue="0" />
+ <result property="residueInfo" column="residue_info"/>
+ <result property="locGroup" column="locgroup"/>
+ <result property="rank" column="rank"/>
+ </resultMap>
+
+ <!-- select featureloc -->
+ <select id="getFeatureLoc" resultMap="select-location">
+ SELECT srcfeature_id, fmin, fmax, strand, phase, residue_info, locgroup, rank
+ FROM featureloc
+ WHERE featureloc.feature_id=#id#
+ </select>
+
+ <!-- WRITE BACK METHODS -->
+
+ <!-- UPDATE -->
+ <update id="updateFeatureLoc"
+ parameterClass="FeatureLoc">
+ UPDATE featureloc
+ SET fmin=$fmin$, fmax=$fmax$, rank=$rank$, strand=$strand$
+ <isNotNull property="phase">
+ , phase=$phase$
+ </isNotNull>
+ <isNull property="phase">
+ , phase=NULL
+ </isNull>
+ WHERE
+ <isNotNull property="featureByFeatureId.uniqueName">
+ feature_id=(SELECT feature_id FROM feature WHERE uniquename=#featureByFeatureId.uniqueName#)
+ </isNotNull>
+ </update>
+
+ <insert id="insertFeatureLoc"
+ parameterClass="Feature">
+ INSERT INTO featureloc
+ ( featureloc_id, feature_id, srcfeature_id, fmin, fmax, strand
+ <isNotNull property="featureLoc.phase">
+ , phase
+ </isNotNull>
+ )
+ VALUES
+ ( nextval('featureloc_featureloc_id_seq'),
+ $featureId$,
+ $featureLoc.featureBySrcFeatureId.featureId$,
+ $featureLoc.fmin$,
+ $featureLoc.fmax$,
+ $featureLoc.strand$
+ <isNotNull property="featureLoc.phase">
+ , $featureLoc.phase$
+ </isNotNull>
+ )
+ </insert>
+
+</sqlMap>
\ No newline at end of file
diff --git a/artemis_sqlmap/FeatureProp.xml b/artemis_sqlmap/FeatureProp.xml
new file mode 100644
index 0000000000000000000000000000000000000000..d202049b1b802b9e61aae0d6b617b22ef3520cd1
--- /dev/null
+++ b/artemis_sqlmap/FeatureProp.xml
@@ -0,0 +1,71 @@
+<?xml version="1.0" encoding="UTF-8" ?>
+
+<!DOCTYPE sqlMap
+ PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
+ "http://ibatis.apache.org/dtd/sql-map-2.dtd">
+
+
+<sqlMap namespace="FeatureProp">
+
+ <typeAlias alias="FeatureProp"
+ type="org.gmod.schema.sequence.FeatureProp"/>
+
+ <resultMap id="select-featureprop"
+ class="FeatureProp">
+ <result property="value" column="value" />
+ <result property="rank" column="rank" />
+ <result property="cvTerm" column="type_id" select="selectCvterm" />
+ </resultMap>
+
+ <resultMap id="featureprop"
+ class="FeatureProp">
+ <result property="value" column="value" />
+ <result property="rank" column="prop_rank" />
+ <result property="cvTerm.cvTermId" column="prop_type_id" />
+ </resultMap>
+
+ <!-- select featureprops e.g. for lazy loading -->
+ <select id="selectFeatureProp" resultMap="select-featureprop">
+ SELECT type_id, value, rank
+ FROM featureprop
+ WHERE feature_id=#feature_id#
+ </select>
+
+ <update id="updateFeatureProp"
+ parameterClass="FeatureProp">
+ UPDATE featureprop
+ SET value=#value#
+ WHERE rank=$rank$ AND type_id=$cvTerm.cvTermId$ AND
+ feature_id=(SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#)
+ </update>
+
+ <!-- INSERT -->
+ <insert id="insertFeatureProp"
+ parameterClass="FeatureProp">
+ INSERT INTO featureprop
+ ( feature_id, type_id, value, rank )
+ VALUES
+ ( (SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#),
+ $cvTerm.cvTermId$, #value#, $rank$ )
+ </insert>
+
+ <!-- DELETE -->
+ <delete id="deleteFeatureProp"
+ parameterClass="FeatureProp">
+ DELETE FROM featureprop
+ WHERE
+ <isNotNull property="feature.uniqueName">
+ feature_id=
+ (SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#)
+ AND
+ </isNotNull>
+ <isGreaterThan property="rank" compareValue="-1">
+ rank=$rank$ AND
+ </isGreaterThan>
+ <isNotNull property="value">
+ value=#value# AND
+ </isNotNull>
+ type_id=$cvTerm.cvTermId$
+ </delete>
+
+</sqlMap>
\ No newline at end of file
diff --git a/artemis_sqlmap/FeatureRelationship.xml b/artemis_sqlmap/FeatureRelationship.xml
new file mode 100644
index 0000000000000000000000000000000000000000..ba40dbf4dd6bccfafb11074e9b8ba5ee7d20996a
--- /dev/null
+++ b/artemis_sqlmap/FeatureRelationship.xml
@@ -0,0 +1,68 @@
+<?xml version="1.0" encoding="UTF-8" ?>
+
+<!DOCTYPE sqlMap
+ PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
+ "http://ibatis.apache.org/dtd/sql-map-2.dtd">
+
+
+<sqlMap namespace="FeatureRelationship">
+
+
+ <typeAlias alias="FeatureRelationship"
+ type="org.gmod.schema.sequence.FeatureRelationship"/>
+
+ <resultMap id="feature_relationship"
+ class="FeatureRelationship">
+ <result property="featureByObjectId.featureId" column="object_id"/>
+ <result property="cvTerm.cvTermId" column="relation_type_id"/>
+ <result property="rank" column="rank"/>
+ <result property="value" column="relation_value" />
+ </resultMap>
+
+ <resultMap id="select-relationship"
+ class="FeatureRelationship">
+ <result property="featureBySubjectId.featureId" column="subject_id" />
+ <result property="featureByObjectId.featureId" column="object_id" />
+ <result property="value" column="value" />
+ <result property="rank" column="rank" />
+ <result property="cvTerm" column="type_id" select="selectCvterm" />
+ </resultMap>
+
+ <!-- select feature_relationship -->
+ <select id="getFeatureRelationship" resultMap="select-relationship">
+ SELECT subject_id, object_id, type_id, value, rank
+ FROM feature_relationship
+ WHERE
+ <dynamic>
+ <isNotNull property="object_id">
+ object_id=#object_id#
+ </isNotNull>
+ <isNotNull property="subject_id">
+ subject_id=#subject_id#
+ </isNotNull>
+ </dynamic>
+ </select>
+
+
+ <update id="updateFeatureRelationshipsForSubjectId"
+ parameterClass="FeatureRelationship">
+ UPDATE feature_relationship
+ SET
+ rank=$rank$, type_id=$cvTerm.cvTermId$
+ WHERE subject_id=
+ ( SELECT feature_id FROM feature WHERE uniquename=#featureBySubjectId.uniqueName# )
+ AND object_id=
+ ( SELECT feature_id FROM feature WHERE uniquename=#featureByObjectId.uniqueName# )
+ </update>
+
+ <insert id="insertFeatureRelationship"
+ parameterClass="FeatureRelationship">
+ INSERT INTO feature_relationship
+ ( subject_id, object_id, type_id )
+ VALUES
+ ( (SELECT feature_id FROM feature WHERE uniquename=#featureBySubjectId.uniqueName#),
+ (SELECT feature_id FROM feature WHERE uniquename=#featureByObjectId.uniqueName#),
+ $cvTerm.cvTermId$ )
+ </insert>
+
+</sqlMap>
\ No newline at end of file
diff --git a/artemis_sqlmap/chado_iBatis_config.xml b/artemis_sqlmap/chado_iBatis_config.xml
index 40c326c0d3614dce7603b66afa1c6b002273c017..e6d36e1eda1f388a4ebff590e313cf6e8b330c80 100644
--- a/artemis_sqlmap/chado_iBatis_config.xml
+++ b/artemis_sqlmap/chado_iBatis_config.xml
@@ -52,6 +52,12 @@
<sqlMap resource="artemis_sqlmap/CvTerm.xml" />
<sqlMap resource="artemis_sqlmap/Pub.xml" />
<sqlMap resource="artemis_sqlmap/Feature.xml" />
+ <sqlMap resource="artemis_sqlmap/FeatureCvTerm.xml" />
+ <sqlMap resource="artemis_sqlmap/FeatureCvTermDbXRef.xml" />
+ <sqlMap resource="artemis_sqlmap/FeatureCvTermProp.xml" />
+ <sqlMap resource="artemis_sqlmap/FeatureLoc.xml" />
+ <sqlMap resource="artemis_sqlmap/FeatureProp.xml" />
+ <sqlMap resource="artemis_sqlmap/FeatureRelationship.xml" />
<sqlMap resource="artemis_sqlmap/DbXRef.xml" />
<sqlMap resource="artemis_sqlmap/Synonym.xml" />