diff --git a/ChangeLog b/ChangeLog index 914b39954f538f0717076729c0763400e50f9142..60369360f1adecbd3df7bf726fcaa9b894ca7368 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,5 +1,28 @@ Version XX + Add validation checks. This will check the following: + All file types: + - CDS have no internal stop codon + - CDS have valid stop codon + GFF / Chado: + - check complete gene model + - check boundaries are valid + - check all features are on the same strand + - check CDS features have a phase + - check attribute column + - qualifiers have a value (not empty) + - only reserved tags start with uppercase + + Validation can be run in two ways: + 1. using the option in View->Feature Filters->Validation checks... which shows + 'failed' features in feature list windows + 2. selecting 'Validation report ...' option in the popup menu when right clicking + on the feature display. This produces a report with an option to auto-fix gene + boundaries and stop codons. + + +Version 15 + Multiple BAM panels can be opened using the bamClone flag this is used with the -Dbam flag: art -Dbam='/pathToFile/file1.bam,/pathToFile/file2.bam' -DbamClone=n