From ef9235b7f4229f7940494ca157d44d5b63c0edd2 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Sun, 5 Dec 2010 18:37:47 +0000
Subject: [PATCH] GT print fix
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15172 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/variant/BCFReader.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/variant/BCFReader.java b/uk/ac/sanger/artemis/components/variant/BCFReader.java
index cdaca442f..5a770b767 100644
--- a/uk/ac/sanger/artemis/components/variant/BCFReader.java
+++ b/uk/ac/sanger/artemis/components/variant/BCFReader.java
@@ -317,7 +317,7 @@ class BCFReader extends AbstractVCFReader
*/
private String getGTString(byte b)
{
- return ((b >> 3) + ( (b >> 6 == 1) ? "|" : "/") + byteToInt(b));
+ return ((b >> 3 & 7) + ( ((b >> 6 & 1 )== 1 ) ? "|" : "/") + (b & 7));
}
private int byteToInt(byte b)
--
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