From f0a820f9527d663493ac37ffe0524953301d4620 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Tue, 16 Sep 2008 14:39:00 +0000
Subject: [PATCH] add non-coding transcript array
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8848 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../components/genebuilder/GeneUtils.java | 26 +++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
index 19bd01a8e..e7fc60390 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
@@ -88,6 +88,8 @@ public class GeneUtils
private static final long serialVersionUID = 1L;
private static Vector hideFeatures = new Vector();
private static JCheckBox showObsolete = new JCheckBox("Show Obsolete Features",false);
+ private static String nonCodingTranscripts[] =
+ { "tRNA", "rRNA", "snRNA", "snoRNA", "ncRNA", "scRNA" };
static
{
@@ -1178,8 +1180,32 @@ public class GeneUtils
return null;
}
+ /**
+ * Return an array on non-coding transcripts
+ * @return
+ */
+ public static String[] getNonCodingTranscripts()
+ {
+ return nonCodingTranscripts;
+ }
+
+ /**
+ * Test if the key given is a non-coding transcript key
+ * @param key
+ * @return
+ */
+ public static boolean isNonCodingTranscripts(final Key key)
+ {
+ for(int i=0; i<nonCodingTranscripts.length; i++)
+ if(nonCodingTranscripts[i].equals(key.getKeyString()))
+ return true;
+ return false;
+ }
+
public static void main(String args[])
{
GeneUtils.defineShowHideGeneFeatures(new FeatureVector());
}
+
+
}
--
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