From f63e674b2dabbf13c7e055ea38aa066807ce3c50 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Fri, 14 Mar 2014 11:47:07 +0000
Subject: [PATCH] fix for paired stack view when showing SNPs
---
uk/ac/sanger/artemis/components/alignment/BamView.java | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java
index 602196b38..0228a8442 100644
--- a/uk/ac/sanger/artemis/components/alignment/BamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java
@@ -1837,9 +1837,13 @@ public class BamView extends JPanel
else
g2.setColor(Color.blue);
+ Color c = g2.getColor();
drawRead(g2, pr.sam1, pixPerBase, ypos, baseAtStartOfView, getSNPs(pr.sam1.sam), ydiff);
if(pr.sam2 != null)
+ {
+ g2.setColor(c);
drawRead(g2, pr.sam2, pixPerBase, ypos, baseAtStartOfView, getSNPs(pr.sam2.sam), ydiff);
+ }
}
}
--
GitLab