diff --git a/.classpath b/.classpath
index 12fa0d986cc996b3ff147c4de13c81224a09ea87..fd6518f2d91b18f4ee0516adc4ce247cdba84437 100644
--- a/.classpath
+++ b/.classpath
@@ -2,7 +2,7 @@
 <classpath>
 	<classpathentry kind="src" path="corba"/>
 	<classpathentry including="nsdb/|seqdb/|type/" kind="src" path="ant-build/src/main"/>
-	<classpathentry excluding="uk/ac/sanger/artemis/ExternalProgramUtils.java|ant-build/src/main/" including="nsdb/|seqdb/|type/|uk/" kind="src" path=""/>
+	<classpathentry excluding="ant-build/src/main/|uk/ac/sanger/artemis/ExternalProgramUtils.java" including="nsdb/|org/|seqdb/|type/|uk/" kind="src" path=""/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
 	<classpathentry kind="lib" path="lib/jemAlign.jar"/>
 	<classpathentry kind="lib" path="lib/jakarta-regexp-1.2.jar"/>
@@ -11,7 +11,6 @@
 	<classpathentry kind="lib" path="lib/j2ssh/j2ssh-artemis-plugin.jar"/>
 	<classpathentry kind="lib" path="lib/j2ssh/commons-logging.jar"/>
 	<classpathentry kind="lib" path="lib/ibatis/ibatis-2.3.4.726.jar"/>
-	<classpathentry kind="lib" path="lib/chado-14-interface.jar"/>
 	<classpathentry kind="lib" path="lib/ibatis/log4j-1.2.14.jar"/>
 	<classpathentry kind="lib" path="test/lib/junit-4.5.jar"/>
 	<classpathentry kind="lib" path="lib/postgresql-8.4-701.jdbc3.jar"/>