From f900eaf32b84b7cc12c6b6c8eac167525c153b1b Mon Sep 17 00:00:00 2001
From: tcarver <tjc@sanger.ac.uk>
Date: Mon, 3 Feb 2014 15:52:55 +0000
Subject: [PATCH] update to validation report section
---
docs/validator.sgml | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/docs/validator.sgml b/docs/validator.sgml
index 5922efa22..f2a8ff120 100644
--- a/docs/validator.sgml
+++ b/docs/validator.sgml
@@ -150,10 +150,10 @@ check that the gene name prefix is consistent within a gene model
<TITLE>Validation Report</TITLE>
<PARA>
-The validation report window displays a summary for the failed features. The
-title bar of the window displays the number of features that have passed and
-the number that have failed the validation checks. The problems identified
-are highlighted in red.
+The validation report window displays a summary for the features that have failed one or
+more of the annotation checks above. The title bar of the window displays the number of
+features that have passed and the number that have failed the validation checks. The
+problems identified are highlighted in red.
</PARA>
<PARA>
@@ -165,7 +165,7 @@ are highlighted in red.
<PARA>
Some of the errors can be fixed automatically. The 'Auto-Fix' button opens a window
-with the fixes enabled that are available for the entry type that is loaded in &prog;. It will
+with the fixes enabled that are available for the entry type that is loaded in &prog;. For example, it will
attempt to fix CDS features that have been found not to end in stop codons. If the last codon is not a
stop codon, but the very next codon is a stop codon, then the end of the feature is
extended by three bases.
@@ -173,7 +173,7 @@ extended by three bases.
<PARA>
For GFF3 and chado entries &prog; will also attempt to fix problems it finds with gene
boundaries and if a phase is absent then a default phase of 0 is given. Once these are
-fixed the results window will automatically update and remove problems it has
+fixed the results window will automatically update and remove the problems it has
managed to resolved.
</PARA>
</SECT2>
--
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