diff --git a/uk/ac/sanger/artemis/components/DatabaseEntrySource.java b/uk/ac/sanger/artemis/components/DatabaseEntrySource.java index e1ce8695ae13b6b1dc807d8da952aabb5ee2b089..81b797d5bed6d4a33476c81ab2455d723d8f45e0 100644 --- a/uk/ac/sanger/artemis/components/DatabaseEntrySource.java +++ b/uk/ac/sanger/artemis/components/DatabaseEntrySource.java @@ -266,8 +266,9 @@ public class DatabaseEntrySource implements EntrySource DefaultMutableTreeNode seq_node; DefaultMutableTreeNode typ_node; - final Vector v_organism = new Vector(organism.keySet()); - Collections.sort(v_organism); + final Object v_organism[] = organism.keySet().toArray(); + final int v_organism_size = v_organism.length; + Arrays.sort(v_organism); while(enum_org.hasMoreElements()) { @@ -277,16 +278,16 @@ public class DatabaseEntrySource implements EntrySource Hashtable seq_type_node = new Hashtable(); - for(int i=0; i<v_organism.size(); i++) + for(int i=0; i<v_organism_size; i++) { - String seq_name = (String)v_organism.get(i); + String seq_name = (String)v_organism[i]; if(seq_name.startsWith(name)) { int ind1 = seq_name.indexOf( "- "); int ind2 = seq_name.lastIndexOf("- "); - String type = seq_name.substring(ind1+2,ind2).trim(); - seq_name = seq_name.substring(ind2+2).trim(); + String type = seq_name.substring(ind1+2,ind2-1); + seq_name = seq_name.substring(ind2+2); if(!seq_type_node.containsKey(type)) {