From f9f0d6e6778c9647673f003f2fb73a7bbe196e2d Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 17 Oct 2005 13:02:20 +0000
Subject: [PATCH] speed up createNodes()
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3776 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../artemis/components/DatabaseEntrySource.java | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/DatabaseEntrySource.java b/uk/ac/sanger/artemis/components/DatabaseEntrySource.java
index e1ce8695a..81b797d5b 100644
--- a/uk/ac/sanger/artemis/components/DatabaseEntrySource.java
+++ b/uk/ac/sanger/artemis/components/DatabaseEntrySource.java
@@ -266,8 +266,9 @@ public class DatabaseEntrySource implements EntrySource
DefaultMutableTreeNode seq_node;
DefaultMutableTreeNode typ_node;
- final Vector v_organism = new Vector(organism.keySet());
- Collections.sort(v_organism);
+ final Object v_organism[] = organism.keySet().toArray();
+ final int v_organism_size = v_organism.length;
+ Arrays.sort(v_organism);
while(enum_org.hasMoreElements())
{
@@ -277,16 +278,16 @@ public class DatabaseEntrySource implements EntrySource
Hashtable seq_type_node = new Hashtable();
- for(int i=0; i<v_organism.size(); i++)
+ for(int i=0; i<v_organism_size; i++)
{
- String seq_name = (String)v_organism.get(i);
+ String seq_name = (String)v_organism[i];
if(seq_name.startsWith(name))
{
int ind1 = seq_name.indexOf( "- ");
int ind2 = seq_name.lastIndexOf("- ");
- String type = seq_name.substring(ind1+2,ind2).trim();
- seq_name = seq_name.substring(ind2+2).trim();
+ String type = seq_name.substring(ind1+2,ind2-1);
+ seq_name = seq_name.substring(ind2+2);
if(!seq_type_node.containsKey(type))
{
--
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