From fdaa21b474e1aec01efa49c1f7f42f5a8b5f16c5 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 3 Apr 2009 15:08:49 +0000
Subject: [PATCH] changes for updating feature residues in the database
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10380 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
artemis_sqlmap/Feature.xml | 8 +++++++-
1 file changed, 7 insertions(+), 1 deletion(-)
diff --git a/artemis_sqlmap/Feature.xml b/artemis_sqlmap/Feature.xml
index e30fdf104..0a4cfca7f 100644
--- a/artemis_sqlmap/Feature.xml
+++ b/artemis_sqlmap/Feature.xml
@@ -485,7 +485,11 @@
</dynamic>
substring(residues from $endBase$ for $basesToEnd$),
seqlen=$seqLen$
- WHERE feature_id=$featureId$
+ WHERE
+ <isNotEqual property="featureId" compareValue="-1">feature_id=$featureId$</isNotEqual>
+ <isEqual property="featureId" compareValue="-1">
+ feature_id=(SELECT feature_id FROM feature WHERE uniquename=#uniqueName#)
+ </isEqual>
</update>
<!-- INSERT -->
@@ -494,6 +498,7 @@
INSERT INTO feature
( feature_id, organism_id, name, uniquename, type_id
<isGreaterThan property="seqLen" compareValue="0"> , seqlen </isGreaterThan>
+ <isNotNull property="residues"> , residues </isNotNull>
<isNotNull property="dbXRef.dbXRefId"> , dbxref_id </isNotNull> )
VALUES
( nextval('feature_feature_id_seq'),
@@ -502,6 +507,7 @@
#uniqueName#,
$cvTerm.cvTermId$
<isGreaterThan property="seqLen" compareValue="0"> , $seqLen$ </isGreaterThan>
+ <isNotNull property="residues"> , #residues# </isNotNull>
<isNotNull property="dbXRef.dbXRefId"> , $dbXRef.dbXRefId$ </isNotNull> )
</insert>
--
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