diff --git a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java index 40b28c0eb54b630b16fe7284ee88ffcd91dc0816..5a8ba07e555a820bf9dcfa178a496370188d561b 100644 --- a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java +++ b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java @@ -252,10 +252,10 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry } else if(ntranscripts == 1) { - if(qualifiers.getQualifierByName("isFminPartial") != null) - addNewQualifier(qualifiers, qualifiers.getQualifierByName("isFminPartial")); - if(qualifiers.getQualifierByName("isFmaxPartial") != null) - addNewQualifier(qualifiers, qualifiers.getQualifierByName("isFmaxPartial")); + if(qualifiers.getQualifierByName("Start_range") != null) + addNewQualifier(qualifiers, qualifiers.getQualifierByName("Start_range")); + if(qualifiers.getQualifierByName("End_range") != null) + addNewQualifier(qualifiers, qualifiers.getQualifierByName("End_range")); } combineQualifiers(qualifiers, geneQualifiers, true); } @@ -781,7 +781,7 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry */ private Location handlePartials(QualifierVector qualifiers, Location location) { - if(qualifiers.getQualifierByName("isFminPartial") != null) + if(qualifiers.getQualifierByName("Start_range") != null) { try { @@ -792,7 +792,7 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry e.printStackTrace(); } } - if(qualifiers.getQualifierByName("isFmaxPartial") != null) + if(qualifiers.getQualifierByName("End_range") != null) { try {