From fee6365f74c0b4dfb3fd6d3702ffd3dc3427bed1 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 18 Sep 2008 08:17:51 +0000
Subject: [PATCH] test for null value when retieving featurepubs
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8858 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../components/genebuilder/GeneUtils.java | 26 ++++++++++++-------
1 file changed, 16 insertions(+), 10 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
index e7fc60390..b5a79a2c6 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
@@ -185,17 +185,23 @@ public class GeneUtils
// feature pubs - literature
final Collection featurePubs = feature.getChadoLazyFeature().getFeaturePubs();
- final Iterator it4 = featurePubs.iterator();
- while(it4.hasNext())
+
+ if(featurePubs != null)
{
- FeaturePub featurePub = (FeaturePub)it4.next();
-
- Qualifier qualifier = feature.getQualifiers().getQualifierByName("literature");
- if(qualifier == null)
- qualifier = new Qualifier("literature", featurePub.getPub().getUniqueName());
- else
- qualifier.addValue(featurePub.getPub().getUniqueName());
- feature.getQualifiers().setQualifier(qualifier);
+ final Iterator it4 = featurePubs.iterator();
+ while(it4.hasNext())
+ {
+ FeaturePub featurePub = (FeaturePub) it4.next();
+
+ Qualifier qualifier = feature.getQualifiers().getQualifierByName(
+ "literature");
+ if(qualifier == null)
+ qualifier = new Qualifier("literature", featurePub.getPub()
+ .getUniqueName());
+ else
+ qualifier.addValue(featurePub.getPub().getUniqueName());
+ feature.getQualifiers().setQualifier(qualifier);
+ }
}
feature.setLazyLoaded(true);
--
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