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package uk.ac.sanger.artemis.components;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import javax.swing.JButton;
import uk.ac.sanger.artemis.EntryChangeEvent;
import uk.ac.sanger.artemis.EntryGroup;
import uk.ac.sanger.artemis.EntryGroupChangeEvent;
import uk.ac.sanger.artemis.EntryGroupChangeListener;
import uk.ac.sanger.artemis.FeatureChangeEvent;
import uk.ac.sanger.artemis.FeatureChangeListener;
import uk.ac.sanger.artemis.FeatureVector;
import uk.ac.sanger.artemis.components.genebuilder.GeneUtils;
import uk.ac.sanger.artemis.io.ChadoCanonicalGene;
import uk.ac.sanger.artemis.io.GFFStreamFeature;
import uk.ac.sanger.artemis.io.ValidateFeature;
class ValidateViewer extends FileViewer implements EntryGroupChangeListener
{
private static final long serialVersionUID = 1L;
private EntryGroup entryGrp;
public ValidateViewer(final String label,
final boolean visible,
final boolean showClearButton,
final boolean showSaveButton,
final EntryGroup entryGrp,
final FeatureVector features)
{
super(label, visible, showClearButton, showSaveButton);
this.entryGrp = entryGrp;
update(features);
setVisible(true);
final JButton fixButton = new JButton("Auto-Fix");
fixButton.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
//entryGrp.getActionController().startAction();
for(int i=0; i<features.size(); i++)
{
if(features.elementAt(i).getEmblFeature() instanceof GFFStreamFeature)
{
fixBoundary((GFFStreamFeature)features.elementAt(i).getEmblFeature());
}
}
//entryGrp.entryChanged(new EntryChangeEvent());
//entryGrp.getActionController().endAction();
}
});
button_panel.add(fixButton);
entryGrp.addFeatureChangeListener(new FeatureChangeListener(){
public void featureChanged(FeatureChangeEvent event)
{
System.out.println("HEREREE");
update(features);
}
});
entryGrp.addEntryGroupChangeListener(new EntryGroupChangeListener(){
public void entryGroupChanged(EntryGroupChangeEvent event)
{
switch(event.getType())
{
case EntryGroupChangeEvent.DONE_GONE:
entryGrp.removeEntryGroupChangeListener(this);
dispose();
break;
}
}
});
}
private void update(final FeatureVector features)
{
super.setText("");
final ValidateFeature gffTest = new ValidateFeature(entryGrp);
for(int i=0; i<features.size(); i++)
gffTest.featureValidate(features.elementAt(i).getEmblFeature(), this);
}
private void fixBoundary(final GFFStreamFeature gffFeature)
{
final ChadoCanonicalGene gene = gffFeature.getChadoGene();
if(gene != null && !gene.getGene().isReadOnly() && GeneUtils.isBoundaryOK(gene) > 0)
{
System.out.println(GeneUtils.getUniqueName(gffFeature));
GeneUtils.checkGeneBoundary(gene);
}
}
public void entryGroupChanged(EntryGroupChangeEvent event)
{
entryGrp.removeEntryGroupChangeListener(ValidateViewer.this);
dispose();
}
}