Splash.java

/* Splash.java
 *
 * This file is part of Artemis
 *
 * Copyright (C) 2000,2002  Genome Research Limited
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 */

package uk.ac.sanger.artemis.components;

import uk.ac.sanger.artemis.Options;
import uk.ac.sanger.artemis.EntrySourceVector;
import uk.ac.sanger.artemis.Logger;
import uk.ac.sanger.artemis.util.InputStreamProgressListener;
import uk.ac.sanger.artemis.util.InputStreamProgressEvent;
import uk.ac.sanger.artemis.util.StringVector;
import uk.ac.sanger.artemis.sequence.Bases;
import uk.ac.sanger.artemis.sequence.AminoAcidSequence;

import java.io.BufferedReader;
import java.io.BufferedWriter;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileReader;
import java.io.FileWriter;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.lang.management.ManagementFactory;
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Dimension;
import java.awt.FontMetrics;
import java.awt.Frame;
import java.awt.Graphics;
import java.awt.Graphics2D;
import java.awt.Image;
import java.awt.MediaTracker;
import java.awt.Point;
import java.awt.RenderingHints;
import java.awt.Toolkit;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
import java.awt.event.KeyEvent;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;

import javax.swing.BorderFactory;
import javax.swing.Box;
import javax.swing.ButtonGroup;
import javax.swing.ImageIcon;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JCheckBoxMenuItem;
import javax.swing.JComponent;
import javax.swing.JFileChooser;
import javax.swing.JFrame;
import javax.swing.JLabel;
import javax.swing.JMenu;
import javax.swing.JMenuBar;
import javax.swing.JMenuItem;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JTextField;
import javax.swing.KeyStroke;
import javax.swing.SwingUtilities;
import javax.swing.UIManager;
import javax.swing.UIManager.LookAndFeelInfo;

import java.util.Enumeration;
import java.util.Properties;

/**
 *  Base class that creates a generic "Splash Screen"
 *  @author Kim Rutherford
 **/

abstract public class Splash extends JFrame
{
  private static final long serialVersionUID = 1L;

  /** Do any necessary cleanup then exit. */
  abstract protected void exit();

  /** A label for status and error messages. */
  final private JLabel status_line = new JLabel("");

  /** The program name that was passed to the constructor. */
  private String program_name;

  /** program version passed to the constructor. */
  private String program_version;

  /** JComponent to draw the main splash screen into */
  private JComponent helix_canvas;

  private JMenuBar menu_bar;
  protected JMenu file_menu;
  protected JMenu options_menu;

  private JCheckBoxMenuItem geneCode[];
  private String geneticCode;

  private static boolean save_wd_properties = false;
  public static boolean save_display_name = false;
  public static boolean save_systematic_names = false;
  /**  The Artemis LogViewer. */
  private final static LogViewer logger = new LogViewer();
  private static String optionsLogString[];
  public static org.apache.log4j.Logger logger4j = 
         org.apache.log4j.Logger.getLogger(Splash.class);
  
  public Splash(final String program_title,
                final String program_name)
  {
    super(program_title);
    initLogger();
    
    logger4j.info(System.getProperty("java.version"));
    logger4j.info(System.getProperty("java.vendor"));
    logger4j.info(System.getProperty("java.home"));
    logger4j.info(System.getProperty("os.name"));
    logger4j.info("Max. Heap Memory / Mb: "+ManagementFactory.getMemoryMXBean().getHeapMemoryUsage().getMax()/1000000);
    logger4j.info("Starting application: "+program_name);
    
    if(optionsLogString != null)
    {
      for(int i=0; i<optionsLogString.length; i++)
        logger4j.info(optionsLogString[i]);
    }
  }
  
  /**
   *  Create a new JFrame for a Splash screen.
   *  @param program_name The full name of the program.
   *  @param program_title The name to use in the title.
   *  @param program_version The version string.
   **/
  public Splash(final String program_name,
                final String program_title,
                final String program_version) 
  {
    this(program_title+" "+program_version, program_name);
    
    this.program_name    = program_name;
    this.program_version = program_version;
    
    final ClassLoader cl = this.getClass().getClassLoader();
    try
    {
      String line;
      InputStream in = cl.getResourceAsStream("etc/versions");
      BufferedReader reader = new BufferedReader(new InputStreamReader(in));
      while((line = reader.readLine()) != null)
      {
        if(line.startsWith(program_title))
        {
          this.program_version = line.substring( program_title.length() ).trim();
          setTitle(program_title+" "+this.program_version);
        }
      }
    }
    catch (Exception ex)
    {
      logger4j.debug(ex.getMessage());
    }

    addWindowListener(new WindowAdapter() 
    {
      public void windowClosing(WindowEvent event) 
      {
        exitApp();
      }
    });

    //final javax.swing.LookAndFeel look_and_feel =
    //  javax.swing.UIManager.getLookAndFeel();

    final javax.swing.plaf.FontUIResource font_ui_resource =
      Options.getOptions().getFontUIResource();

    final Enumeration<Object> keys = UIManager.getDefaults().keys();
    while(keys.hasMoreElements()) 
    {
      Object key = keys.nextElement();