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/*
* This file is part of Artemis
*
* Copyright (C) 2013 Genome Research Limited
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
*/
package uk.ac.sanger.artemis.components;
import static org.junit.Assert.assertTrue;
import java.awt.GraphicsEnvironment;
import javax.swing.JFrame;
import junit.framework.Assert;
import org.junit.Test;
import uk.ac.sanger.artemis.EntryGroup;
import uk.ac.sanger.artemis.Feature;
import uk.ac.sanger.artemis.FeatureVector;
import uk.ac.sanger.artemis.FeatureSegmentVector;
import uk.ac.sanger.artemis.Selection;
import uk.ac.sanger.artemis.io.Entry;
import uk.ac.sanger.artemis.io.Utils;
import uk.ac.sanger.artemis.io.ValidateFeatureTest;
public class EditMenuTest
{
@Test
/**
* Split a gene model and undo
*/
public void gffUnMergeAndUndo()
{
// ignore if in headless mode with no x11
if(GraphicsEnvironment.getLocalGraphicsEnvironment().isHeadless())
return;
final EntryGroup egrp = Utils.getEntryGroup("/data/Pf3D7_01_02_v3.gff.gz");
FeatureVector features = egrp.getAllFeatures();
final Selection selection = new Selection(null);
Feature f = Utils.getCDSFeatureByIdPrefix("PF3D7_0103500.1", features);
final FeatureSegmentVector segments = f.getSegments();
selection.add(f);
selection.add(segments.elementAt(0));
selection.add(segments.elementAt(1));
// validate GFF features before split and undo and after
// to ensure the gene model structures remain consistent
ValidateFeatureTest.testAll(egrp);
EditMenu.unmergeFeature(null, selection, egrp);
EditMenu.undo(null, selection, egrp);
ValidateFeatureTest.testAll(egrp);
}
}