Skip to content
Snippets Groups Projects
manual.sgml 3.28 KiB
Newer Older
  • Learn to ignore specific revisions
  • tjc's avatar
    tjc committed
    <!DOCTYPE Book PUBLIC "-//OASIS//DTD DocBook V4.1//EN" [
    <!ENTITY intro SYSTEM "intro_chapter.sgml">
    <!ENTITY start SYSTEM "start_chapter.sgml">
    <!ENTITY mainwindow SYSTEM "main_window_chapter.sgml">
    
    tjc's avatar
    tjc committed
    <!ENTITY ssh SYSTEM "ssh_chapter.sgml">
    
    Tim Carver's avatar
    Tim Carver committed
    <!ENTITY proj SYSTEM "project_manager.sgml">
    
    tjc's avatar
    tjc committed
    <!ENTITY options SYSTEM "options.sgml">
    <!ENTITY filemenu SYSTEM "file_menu.sgml">
    <!ENTITY menus SYSTEM "menus.sgml">
    <!ENTITY runmenu SYSTEM "run_menu.sgml">
    <!ENTITY displaymenu SYSTEM "display_menu.sgml">
    <!ENTITY requirements SYSTEM "requirements.sgml">
    <!ENTITY acknowledgments SYSTEM "acknowledgments.sgml">
    <!ENTITY copyright SYSTEM "copyright.sgml">
    <!ENTITY concepts SYSTEM "concepts.sgml">
    
    tcarver's avatar
    tcarver committed
    <!ENTITY filetypes SYSTEM "filetypes.sgml">
    
    tjc's avatar
    tjc committed
    <!ENTITY views-popup SYSTEM "views_popup.sgml">
    <!ENTITY views-scrolling SYSTEM "views_scrolling.sgml">
    <!ENTITY views-scale SYSTEM "views_scale.sgml">
    <!ENTITY views-selection SYSTEM "views_selection.sgml">
    <!ENTITY views-directedit SYSTEM "views_directedit.sgml">
    <!ENTITY featurelist SYSTEM "feature_list.sgml">
    <!ENTITY mousebuttons SYSTEM "mousebuttons.sgml">
    
    tcarver's avatar
    tcarver committed
    <!ENTITY validator SYSTEM "validator.sgml">
    
    tjc's avatar
    tjc committed
    <!ENTITY gettingjava SYSTEM "getting_java.sgml">
    <!ENTITY unixargs SYSTEM "unix_args.sgml">
    
    tjc's avatar
    tjc committed
    <!ENTITY jvmopts SYSTEM "jvm_options.sgml">
    
    tjc's avatar
    tjc committed
    <!ENTITY options-menu SYSTEM "options_menu.sgml">
    
    tjc's avatar
    tjc committed
    <!ENTITY nextgen SYSTEM "next_gen.sgml">
    
    tjc's avatar
    tjc committed
    
    <!ENTITY % artemis-only "INCLUDE">
    
    tcarver's avatar
    tcarver committed
    <!ENTITY % act-only "IGNORE">
    
    tjc's avatar
    tjc committed
    
    <!ENTITY prog "Artemis">
    <!ENTITY art "Artemis">
    
    <!ENTITY command-name "art">
    
    <!ENTITY lt CDATA "&#60;">
    <!ENTITY gt CDATA "&#62;">
    ]>
    <!-- see: http://www.pcmedia.co.nz/~michaelh/intro-to-sgml/html/c04.htm-->
    <!-- and: http://www.pcmedia.co.nz/~michaelh/intro-to-sgml/html/template.sgml-->
    
    tjc's avatar
    tjc committed
    <!-- $Header: //tmp/pathsoft/artemis/docs/manual.sgml,v 1.8 2008-01-15 16:36:19 tjc Exp $ -->
    
    tjc's avatar
    tjc committed
    <BOOK ID="index">
    
    tjc's avatar
    tjc committed
      <TITLE> The &art; Manual </TITLE>
      <BOOKINFO>
        <PRODUCTNAME>
          <EMPHASIS>&art;</EMPHASIS> - a genome annotation tool
        </PRODUCTNAME>
        <PUBDATE>22 February 1999</PUBDATE>
        <COPYRIGHT>
    
    tcarver's avatar
    tcarver committed
          <YEAR>1999-2014</YEAR>
    
    tjc's avatar
    tjc committed
          <HOLDER>Genome Research Limited</HOLDER>
        </COPYRIGHT>
        <LEGALNOTICE>
          <PARA>&prog; is free software; you can redistribute
    	it and/or modify it under the terms of the GNU General Public
    	License as published by the Free Software Foundation; either
    	version 2 of the License, or (at your option) any later
    	version.</PARA>
          
          <PARA>This program is distributed in the hope that it will be
    	useful, but WITHOUT ANY WARRANTY; without even the implied
    	warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
    	See the <ULINK URL="http://www.gnu.org/copyleft/gpl.html" 
            TYPE="external">GNU General Public License</ULINK> for more 
            details.</PARA>
          
          <PARA>You should have received a copy of the GNU General Public
    	License along with this program; if not, write to the Free
    	Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
    	MA 02111-1307 USA</PARA>
          
          <PARA>For the full text of the license see <XREF LINKEND="COPYRIGHT">.
          </PARA>
        </LEGALNOTICE>
        <ABSTRACT>
          <PARA>
    
    tcarver's avatar
    tcarver committed
    This document describes release 16 of &art; a DNA sequence viewer and
    
    tjc's avatar
    tjc committed
    sequence annotation tool.
          </PARA>
        </ABSTRACT>
      </BOOKINFO>
      <TOC></TOC>
      &intro;
      &start;
      &mainwindow;
    
    Tim Carver's avatar
    Tim Carver committed
      &proj;
    
    tjc's avatar
    tjc committed
      &ssh;
    
    tjc's avatar
    tjc committed
      &options;
    </BOOK>