Newer
Older
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2. uncompress and untar the artemis-unix-releases-<version number>.tar.gz file
On UNIX the command is: tar xzvf artemis-unix-releases-<version number>.tar.gz
This will create an "artemis" directory containing all the java classes. On
Unix the easiest way to run the program is to run the script called art in the
/some/directory/artemis/art
If all goes well you will be presented with a small window with two
menus. From the File menu you can open a flat file containing an
entry. If it reads the entry successfully a new window will open,
which shows the sequence and features for the entry.
Download and Install from GitHub
================================
Installation instructions for GitHub download
1. Download:
git clone http://github.com/sanger-pathogens/Artemis.git
2. Compile the code:
cd Artemis
3. Run Artemis:
./art
or ACT:
Doing a full release with signed jar files
==========================================
You will need to drop the Pathogen Informatics Artemis maven.properties file in the project root, then run:
mvn -DEMBOSS_ROOT=<Emboss installation folder> clean release -P release
Running the test suite
======================
cd test
“kpepper”
committed
RunDefaultUnitTests.sh - this runs all non-automated unit tests.
RunEvoSuiteUnitTests.sh - this runs all EvoSuite generated unit tests.
RunAllUnitTests.sh - this runs all non-automated and EvoSuite generated unit tests.