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/* AlignMatchVector.java
*
* created: Sat Jun 17 2000
*
* This file is part of Artemis
*
* Copyright (C) 2000,2001 Genome Research Limited
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
* $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/AlignMatchVector.java,v 1.3 2008-06-26 09:38:13 tjc Exp $
*/
package uk.ac.sanger.artemis;
import uk.ac.sanger.artemis.util.FastVector;
import java.util.Comparator;
/**
* This class is a Vector of AlignMatch objects.
*
* @author Kim Rutherford <kmr@sanger.ac.uk>
* @version $Id: AlignMatchVector.java,v 1.3 2008-06-26 09:38:13 tjc Exp $
**/
public class AlignMatchVector {
/**
* Create a new (empty) AlignMatchVector object.
**/
public AlignMatchVector () {
}
/**
* Appends the given AlignMatch object to the vector if and only if it
* isn't already in the vector.
**/
public void addElement (AlignMatch item) {
vector.add (item);
}
/**
* Appends the given AlignMatch object to the vector if and only if it
* isn't already in the vector. (same as addElement ()).
**/
public void add (AlignMatch item) {
addElement (item);
}
/**
* Performs the same function as Vector.elementAt ()
**/
public AlignMatch elementAt (int index) {
}
/**
* Performs the same function as Vector.removeElement ()
**/
public boolean remove (AlignMatch item) {
return vector.remove (item);
}
/**
* Return true if this object contains the given AlignMatch.
**/
public boolean contains (AlignMatch item) {
}
/**
* Performs the same function as Vector.removeAllElements ()
**/
public void removeAllElements () {
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}
/**
* Performs the same function as Vector.removeElement ()
**/
public int indexOf (AlignMatch item) {
return vector.indexOf (item);
}
/**
* Performs the same function as Vector.size ()
**/
public int size () {
return vector.size ();
}
/**
* Sort this vector.
* @param cmp The returned vector will be sorted with this Comparator.
**/
public void sort (final Comparator cmp) {
vector = vector.sort (cmp);
}
/**
* Create a new AlignMatchVector with the same contents as this one.
**/
public Object clone () {
final AlignMatchVector return_vector = new AlignMatchVector ();
return_vector.vector = (FastVector) vector.clone ();
return return_vector;
}
/**
* Storage for AlignMatch objects.
**/
private FastVector vector = new FastVector ();
}