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j2ssh.properties 856 B
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    port=2222
    host=localhost
    bsub=bsub -q  longblastq -n 1 -R 'select[blast && mem > 500] rusage[r1m=1:mem=500]' 
    blastp=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -p 
    
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    blastx=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -x
    tblastx=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -tx
    
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    blastn=-I /nfs/pathsoft/prod/perl/flexi_blast.pl
    
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    fasta=-I /nfs/disk222/yeastpub/bio-soft/fasta/fasta33_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
    
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    fastx=-I /nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
    
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    %uniprot=%U
    %uniprot_archaea=%A
    %uniprot_bacteria=%B
    %uniprot_eukaryota=%E
    %uniprot_viruses=%V
    %uniprot_rest=%R
    %malaria=%M
    %kineto_aa=%K
    default_db=%uniprot_bacteria
    
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    remotedir.PD=/nfs/pathdata
    remotedir.YP=/nfs/disk222/yeastpub
    localdir.PD=/nfs/pathdata
    localdir.YP=/nfs/disk222/yeastpub