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FeatureCvTermDbXRef.xml 2.77 KiB
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<!DOCTYPE sqlMap 
    PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN" 
    "http://ibatis.apache.org/dtd/sql-map-2.dtd"> 
 

<sqlMap namespace="FeatureCvTermDbXRef"> 

     <typeAlias alias="FeatureCvTermDbXRef"
        type="org.gmod.schema.sequence.FeatureCvTermDbXRef"/>
        
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     <resultMap id="map-featurecvtermdbxref" class="FeatureCvTermDbXRef"
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                groupBy="featureCvTermId">
        <result property="featureCvTerm.featureCvTermId"   column="feature_cvterm_id" />
        <result property="dbXRef.accession"   column="accession"/>
        <result property="dbXRef.version"     column="version"/>
        <result property="dbXRef.description" column="description"/>
        <result property="dbXRef.db.name" column="name"/>
    </resultMap>
   
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    <select id="getFeatureCvTermDbXRefByFeature" parameterClass="Feature"
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             resultMap="map-featurecvtermdbxref">
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       SELECT fcd.feature_cvterm_id, dbx.*, db.name 
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       FROM feature_cvterm_dbxref fcd 
       LEFT JOIN dbxref dbx ON dbx.dbxref_id=fcd.dbxref_id 
       LEFT JOIN db ON db.db_id=dbx.db_id
       <dynamic>
          <isNotNull property="uniqueName">
            LEFT JOIN feature_cvterm fc ON fcd.feature_cvterm_id=fc.feature_cvterm_id
            WHERE
            feature_id=(SELECT feature_id FROM feature WHERE uniquename=#uniqueName#)
          </isNotNull>
       </dynamic>
    </select>
	<select id="getFeatureCvTermDbXRefBySrcFeature" parameterClass="org.gmod.schema.sequence.Feature"
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             resultMap="map-featurecvtermdbxref">
       SELECT fcd.feature_cvterm_id, dbx.*, db.name 
       FROM feature_cvterm_dbxref fcd 
       LEFT JOIN dbxref dbx ON dbx.dbxref_id=fcd.dbxref_id 
       LEFT JOIN db ON db.db_id=dbx.db_id
	   LEFT JOIN feature_cvterm fc ON fcd.feature_cvterm_id=fc.feature_cvterm_id
	   WHERE feature_id IN 
       (SELECT feature_id FROM featureloc fl WHERE srcfeature_id=$featureId$
	    <isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND"> 
           <![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
        </isGreaterThan>)
    </select>
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    <select id="getFeatureCvTermDbXRefByFeatureCvTerm" parameterClass="java.lang.Integer"
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             resultMap="map-featurecvtermdbxref">
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       SELECT fcd.feature_cvterm_id, dbx.*, db.name 
       FROM feature_cvterm_dbxref fcd 
       LEFT JOIN dbxref dbx ON dbx.dbxref_id=fcd.dbxref_id 
       LEFT JOIN db ON db.db_id=dbx.db_id
       WHERE feature_cvterm_id=$feature_cvterm_id$
    </select>
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    <!-- INSERT -->
    <insert id="insertFeatureCvTermDbXRef" 
            parameterClass="FeatureCvTermDbXRef">
      INSERT INTO feature_cvterm_dbxref
        ( feature_cvterm_id, dbxref_id )
      VALUES
        ( $featureCvTerm.featureCvTermId$, $dbXRef.dbXRefId$  )
    </insert>
    
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</sqlMap>