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ID AF063097 standard; DNA; PHG; 33593 BP.
XX
AC AF063097; J02474; L29304; M12772; M13202; M27131; M27836; M34756; M58023;
AC M59752; M64677; U02597; X02300; X02301; X05655; X61229; X87173; X99627;
AC X99628; Z11483;
XX
SV AF063097.1
XX
DT 21-MAY-1998 (Rel. 55, Created)
DT 07-JAN-1999 (Rel. 58, Last updated, Version 2)
XX
DE Bacteriophage P2, complete genome.
XX
KW .
XX
OS Enterobacteria phage P2
OC Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae;
OC P2-like Viruses.
XX
RN [1]
RP 1-9, 33582-33593
RX MEDLINE; 73220701.
RA Murray K., Murray N.E.;
RT "Terminal nucleotide sequences of DNA from temperate coliphages";
RL Nature New Biol. 243(126):134-139(1973).
XX
RN [2]
RP 1-26, 33568-33593
RX MEDLINE; 77209985.
RA Murray K., Isaksson-Forsen A.G., Challberg M., Englund P.T.;
RT "Symmetrical nucleotide sequences in the recognition sites for the ter
RT function of bacteriophages P2, 299 and 186";
RL J. Mol. Biol. 112(3):471-489(1977).
XX
RN [3]
RP 1-26, 33568-33593
RX MEDLINE; 82051282.
RA Lindqvist B.H.;
RT "Recombination between satellite phage P4 and its helper P2. I. In vivo and
RT in vitro construction of P4: :P2 hybrid satellite phage";
RL Gene 14(4):231-241(1981).
XX
RN [4]
RP 2929-3589
RX MEDLINE; 83268689.
RA Christie G.E., Calendar R.;
RT "Bacteriophage P2 late promoters. Transcription initiation sites for two
RT late mRNAs";
RL J. Mol. Biol. 167(4):773-790(1983).
XX
RN [5]
RP 25456-25995
RX MEDLINE; 84248044.
RA Ljungquist E., Kockum K., Bertani E.L.;
RT "DNA sequence of the repressor gene and operator region of bacteriophage
RT P2";
RL Proc. Natl. Acad. Sci. U.S.A. 81:3988-3992(1984).
XX
RN [6]
RP 10188-10518, 17510-17996
RX MEDLINE; 85160858.
RA Christie G.E., Calender R.;
RT "Bacteriophage P2 late promoters - comparison of the four late promoter
RT sequences";
RL J. Mol. Biol. 181:373-382(1985).
XX
RN [7]
RP 23909-24339
RX MEDLINE; 86281704.
RA Birkeland N.K., Lindquist B.H.;
RT "Coliphage P2 late control gene ogr. DNA sequence and product
RT identification";
RL J. Mol. Biol. 188(3):487-490(1986).
XX
RN [8]
RP 23889-24333
RX MEDLINE; 86205872.
RA Christie G.E., Haggard-Ljungquist E., Feiwell R., Calendar R.;
RT "Regulation of bacteriophage P2 late-gene expression: the ogr gene";
RL Proc. Natl. Acad. Sci. U.S.A. 83(10):3238-3242(1986).
XX
RN [9]
RP 25849-27048
RX MEDLINE; 87286423.
RA Haggard-Ljungquist E., Kockum K., Bertani L.E.;
RT "DNA sequences of bacteriophage P2 early genes cox and B and their
RT regulatory sites";
RL Mol. Gen. Genet. 208(1-2):52-56(1987).
XX
RN [10]
RP 25849-27048
RX MEDLINE; 88082694.
RA Saha S., Haggard-Ljungquist E., Nordstrom K.;
RT "The cox protein of bacteriophage P2 inhibits the formation of the
RT repressor protein and autoregulates the early operon";
RL EMBO J. 6(10):3191-3199(1987).
XX
RN [11]
RP 24252-25595
RX MEDLINE; 90006769.
RA Yu A., Bertani L.E., Haggard-Ljungquist E.;
RT "Control of prophage integration and excision in bacteriophage P2:
RT nucleotide sequences of the int gene and att sites";
RL Gene 80(1):1-11(1989).
XX
RN [12]
RP 31590-33593
RX MEDLINE; 90152373.
RA Haggard-Ljungquist E., Barreiro V., Calendar R., Kurnit D.M., Cheng H.;
RT "The P2 phage old gene: sequence, transcription and translational control";
RL Gene 85(1):25-33(1989).
XX
RN [13]
RP 1-266, 33200-33593
RX MEDLINE; 91092507.
RA Ziermann R., Calendar R.;
RT "Characterization of the cos sites of bacteriophages P2 and P4";
RL Gene 96(1):9-15(1990).
XX
RN [14]
RP 17627-19373
RX MEDLINE; 91135001.
RA Temple L.M., Forsburg S.L., Calendar R., Christie G.E.;
RT "Nucleotide sequence of the genes encoding the major tail sheath and tail
RT tube proteins of bacteriophage P2";
RL Virology 181(1):353-358(1991).
XX
RN [15]
RP 4050-5178
RX MEDLINE; 91220668.
RA Six E.W., Sunshine M.G., Williams J., Haggard-Ljungquist E.,
RA Lindqvist B.H.;
RT "Morphopoietic switch mutations of bacteriophage P2";
RL Virology 182(1):34-46(1991).
XX
RN [16]
RP 1-6551
RX MEDLINE; 92115571.
RA Linderoth N.A., Ziermann R., Haggard-Ljungquist E., Christie G.E.,
RA Calendar R.;
RT "Nucleotide sequence of the DNA packaging and capsid synthesis genes of
RT bacteriophage P2";
RL Nucleic Acids Res. 19(25):7207-7214(1991).
XX
RN [17]
RP 12173-15684
RX MEDLINE; 92165720.
RA Haggard-Ljungquist E., Halling C., Calendar R.;
RT "DNA sequence of two tail genes of bacteriophage P2: Further evidence for
RT horizontal transfer of tail fiber genes among unrelated bacteriophages";
RL J. Bacteriol. 174:1462-1477(1992).
XX
RN [18]
RP 26923-30721
RX MEDLINE; 93287108.
RA Liu Y., Saha S., Haggard-Ljungquist E.;
RT "Studies of bacteriophage P2 DNA replication. The DNA sequence of the
RT cis-acting gene A and ori region and construction of a P2 mini-chromosome";
RL J. Mol. Biol. 231(2):361-374(1993).
XX
RN [19]
RP 6288-8381
RX MEDLINE; 94327465.
RA Ziermann R., Bartlett B., Calendar R., Christie G.E.;
RT "Functions involved in bacteriophage P2-induced host cell lysis and
RT identification of a new tail gene";
RL J. Bacteriol. 176:4974-4984(1994).
XX
RN [20]
RP 8376-10381
RX MEDLINE; 94233699.
RA Linderoth N.A., Julien B., Flick K.E., Calendar R., Christie G.E.;
RT "Molecular cloning and characterization of bacteriophage P2 genes R and S
RT involved in tail completion";
RL Virology 200:347-359(1994).
XX
RN [21]
RP 10276-12739
RX MEDLINE; 96036485.
RA Haggard-Liungquist E., Jacobsen E., Rishovd S., Six W.S., Nilssen O.,
RA Sunshine M.G., Lindqvist B.H., Kim K.J., Barreiro V., Koonin E.V.,
RA Calendar R.;
RT "Bacteriophage P2: genes involved in baseplate assembly";
RL Virology 213(1):109-121(1995).
XX
RN [22]
RP 15627-17626, 30643-31622
RA Calendar R., Yu S., Myung H., Barreiro V., Odegrip R., Bertani L.E.,
RA Carlson K., Davenport L., Mosig G., Christie G.E., Haggard-Ljungquist E.;
RT "The lysogenic conversion genes of coliphage P2 have unusually high AT
RT content";
RL (in) Syvanen M., Kado C. (eds.);
RL HORIZONTAL GENE TRANSFER:1-1;
RL Chapman and Hall, London (1998)
XX
RN [23]
RP 19374-23954
RA Christie G.E., Temple L.M., Bartlett B.A., Goodwin T.S.;
RT "Bacteriophage P2 tail assembly genes: Gene organization and a programmed
RT translational frameshift parallel those of bacteriophage lambda";
RL Unpublished.
XX
RN [24]
RP 1-33593
RA Christie G.E., Haggard-Ljungquist E., Calendar R.;
RT "The complete genome of bacteriophage P2";
RL Unpublished.
XX
RN [25]
RP 24351-25595
RA Haggard-Ljungquist E.;
RT ;
RL Submitted (15-SEP-1989) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbial Genetics, Karolinska Institutet, Stockholm, Sweden
XX
RN [26]
RP 1-6551
RA Linderoth N.A.;
RT ;
RL Submitted (13-AUG-1991) to the EMBL/GenBank/DDBJ databases.
RL Dept of Mol and Cell Biology, Div of Biochemistry and Molecular Biology,
RL University of California, 401 Barker Hall, Berkeley, CA 94720, USA
XX
RN [27]
RP 26923-30721
RA Haggard-Ljungquist E.;
RT ;
RL Submitted (12-NOV-1991) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbial Genetics, Karolinska Institutet, S-10401,
RL Stockholm, Sweden
XX
RN [28]
RP 8376-10381
RA Linderoth N.A.;
RT ;
RL Submitted (18-OCT-1993) to the EMBL/GenBank/DDBJ databases.
RL Nora A. Linderoth, Laboratory of Genetics, The Rockefeller University, 1230
RL York Avenue, New York, NY 10021, USA
XX
RN [29]
RP 10276-12739
RA Haggard E.B.;
RT ;
RL Submitted (12-MAY-1995) to the EMBL/GenBank/DDBJ databases.
RL Department of Genetics, Stockholm University, S-10691, Stockholm, Sweden
XX
RN [30]
RP 15627-17626, 30643-31622
RA Haggard-Ljungquist E.;
RT ;
RL Submitted (30-JUL-1996) to the EMBL/GenBank/DDBJ databases.
RL Department of Genetics, Stockholm University, S-106 91, Stockholm, Sweden
XX
RN [31]
RP 17510-23954
RA Christie G.E.;
RT ;
RL Submitted (21-NOV-1996) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology and Immunology, Virginia Commonwealth
RL University, Box 980678, Richmond, VA 23298-0678, USA
XX
RN [32]
RP 1-33593
RA Christie G.E.;
RT ;
RL Submitted (05-MAY-1998) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology and Immunology, Virginia Commonwealth
RL University, Richmond, VA 23298-0678, USA
XX
DR SPTREMBL; O64312; O64312.
DR SPTREMBL; O64313; O64313.
DR SPTREMBL; O64314; O64314.
DR SPTREMBL; O64315; O64315.
DR SPTREMBL; P79669; P79669.
DR SPTREMBL; P79670; P79670.
DR SPTREMBL; Q38498; Q38498.
DR SWISS-PROT; P04132; RPC_BPP2.
DR SWISS-PROT; P07695; VCOX_BPP2.
DR SWISS-PROT; P07696; VPB_BPP2.
DR SWISS-PROT; P08762; VOGR_BPP2.
DR SWISS-PROT; P10312; VPD_BPP2.
DR SWISS-PROT; P13520; VOLD_BPP2.
DR SWISS-PROT; P22501; VPF1_BPP2.
DR SWISS-PROT; P22502; VPF2_BPP2.
DR SWISS-PROT; P25475; VPL_BPP2.
DR SWISS-PROT; P25476; VPM_BPP2.
DR SWISS-PROT; P25477; VPN_BPP2.
DR SWISS-PROT; P25478; VPO_BPP2.
DR SWISS-PROT; P25479; VPP_BPP2.
DR SWISS-PROT; P25480; VPQ_BPP2.
DR SWISS-PROT; P26699; TFA_BPP2.
DR SWISS-PROT; P26700; VPH_BPP2.
DR SWISS-PROT; P26701; VPI_BPP2.
DR SWISS-PROT; P31340; VPV_BPP2.
DR SWISS-PROT; P36932; VINT_BPP2.
DR SWISS-PROT; P36933; VPR_BPP2.
DR SWISS-PROT; P36934; VPS_BPP2.
DR SWISS-PROT; P36935; YSV_BPP2.
DR SWISS-PROT; P51767; VPJ_BPP2.
DR SWISS-PROT; P51768; VPW_BPP2.
DR SWISS-PROT; P51769; LYSA_BPP2.
DR SWISS-PROT; P51770; LYSB_BPP2.
DR SWISS-PROT; P51771; LYCV_BPP2.
DR SWISS-PROT; P51772; VPX_BPP2.
DR SWISS-PROT; P51773; HOLI_BPP2.
DR SWISS-PROT; Q06419; VPA_BPP2.
DR SWISS-PROT; Q06422; YO80_BPP2.
DR SWISS-PROT; Q06423; YO81_BPP2.
DR SWISS-PROT; Q06424; YO82_BPP2.
DR SWISS-PROT; Q06425; YO83_BPP2.
DR SWISS-PROT; Q06426; YO91_BPP2.
XX
CC On May 20, 1998 this sequence version replaced gi:506838 gi:15821
CC gi:1806573 gi:215666 gi:506836 gi:508561 gi:1061043 gi:215669
CC gi:1769975 gi:494974 gi:215664 gi:15620 gi:393451 gi:1769977
CC gi:215681 gi:215675 gi:215676 gi:15141 gi:414530.
XX
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FH Key Location/Qualifiers
FH
FT source 1..33593
FT /db_xref="taxon:10679"
FT /organism="Enterobacteria phage P2"
FT /lab_host="Escherichia coli"
FT misc_feature 1..19
FT /note="cosL; left cohesive end"
FT terminator complement(160..181)
FT /note="tQ; putative rho-independent terminator for P
FT operon"
FT CDS complement(187..1221)
FT /codon_start=1
FT /db_xref="SWISS-PROT:P25480"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="Q"
FT /function="presumed portal protein"
FT /product="gpQ"
FT /protein_id="AAD03268.1"
FT /translation="MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVE
FT CISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLD
FT FLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSVFHL
FT LEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE
FT MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH
FT RIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLD
FT TDND"
FT variation complement(653)
FT /note="Qam34 mutation"
FT /replace="t"
FT /gene="Q"
FT CDS complement(1221..2993)
FT /codon_start=1
FT /db_xref="SWISS-PROT:P25479"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="P"
FT /function="terminase; DNA-dependent ATPase"
FT /product="gpP"
FT /protein_id="AAD03269.1"
FT /translation="MTITTDTTLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWK
FT QRDGWDSVAPISRVEMSLEARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTG
FT NEADLNPNVANRNKGGRRKPKKNFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEHRIRD
FT ILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFARLVDVDLTGD
FT PIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTY
FT FSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIED
FT ALKGGCTLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYA
FT PFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAES
FT IRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRG
FT CLEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTA
FT GISTPLTSTILEFY"
FT variation complement(2210)
FT /note="Pam24 and Pam137 mutations"
FT /replace="a"
FT /gene="P"
FT variation complement(2948)
FT /note="Pam253 mutation"
FT /replace="a"
FT /gene="P"
FT misc_feature complement(3016)
FT /note="transcription start site for P operon; encodes P,Q"
FT /gene="P"
FT misc_feature 3057..3087
FT /evidence=EXPERIMENTAL
FT /note="activator binding site; pO, pP promoters"
FT misc_feature 3127
FT /evidence=EXPERIMENTAL
FT /note="transcription start site for O operon; encodes O,
FT N, M, L, X, Y, K, lysA, lysB, R, S"
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
FT CDS 3167..4021
FT /codon_start=1
FT /db_xref="SWISS-PROT:P25478"
FT /transl_table=11
FT /gene="O"
FT /function="presumed capsid scaffolding protein"
FT /product="gpO"
FT /protein_id="AAD03270.1"
FT /translation="MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRIN
FT LEHLRGILPDGIFKRYGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKV
FT YTSMEIQPNFANTGKCYLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISV
FT ATPVELEFEDLPETVFTALTEKVKSIFGRKQASDDARLNDVHEAVTAVAEHVQEKLSAT
FT EQRLAEMETAFSALKQEVTDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALM
FT TNC"
FT variation 3206
FT /note="Oam71 mutation"
FT /replace="t"
FT /gene="O"
FT variation 3411
FT /note="Oam7 mutation"
FT /replace="a"
FT /gene="O"
FT variation 3878
FT /note="Oam279 mutation"
FT /replace="t"
FT /gene="O"
FT CDS 4080..5153
FT /codon_start=1
FT /db_xref="SWISS-PROT:P25477"
FT /transl_table=11
FT /gene="N"
FT /function="major capsid precursor"
FT /product="gpN"
FT /protein_id="AAD03271.1"
FT /translation="MRQETRFKFNAYLSRVAELNGIDAGDVSKKFTVEPSVTQTLMNTM
FT QESSDFLTRINIVPVSEMKGEKIGIGVTGSIASTTDTAGGTERQPKDFSKLASNKYECD
FT QINFDFYIRYKTLDLWARYQDFQLRIRNAIIKRQSLDFIMAGFNGVKRAETSDRSSNPM
FT LQDVAVGWLQKYRNEAPARVMSKVTDEEGRTTSEVIRVGKGGDYASLDALVMDATNNLI
FT EPWYQEDPDLVVIVGRQLLADKYFPIVNKEQDNSEMLAADVIISQKRIGNLPAVRVPYF
FT PADAMLITKLENLSIYYMDDSHRRVIEENPKLDRVENYESMNIDYVVEDYAAGCLVEKI
FT KVGDFSTPAKATAEPGA"
FT variation 4349..4350
FT /note="Nam209 mutation"
FT /replace="at"
FT /gene="N"
FT variation 4630
FT /note="sir3 mutation; defective for choice of small
FT capsids by satellite phage P4"
FT /note="sir5 mutation; defective for choice of small
FT capsids by satellite phage P4"
FT /note="sir9 mutation; defective for choice of small
FT capsids by satellite phage P4"
FT /replace=""
FT /gene="N"
FT variation 4699
FT /note="sir2, sir6 and sir8 mutations; defective for choice
FT of small capsids by satellite phage P4"
FT /replace="t"
FT /gene="N"
FT variation 4740
FT /note="sir1 mutation; defective for choice of small
FT capsids by satellite phage P4"
FT /note="sir4 mutation; defective for choice of small
FT capsids by satellite phage P4"
461
462
463
464
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670
671
672
673
FT /replace="a"
FT /gene="N"
FT CDS 5157..5900
FT /codon_start=1
FT /db_xref="SWISS-PROT:P25476"
FT /transl_table=11
FT /gene="M"
FT /function="terminase"
FT /product="gpM"
FT /protein_id="AAD03272.1"
FT /translation="MTSPAQRHMMRVSAAMTAQREAAPLRHATVYEQMLVKLAADQRTL
FT KAIYSKELKAAKKRELLPFWLPWVNGVLELGKGAQDDILMTVMLWRLDTGDIAGALEIA
FT RYALKYGLTMPGKHRRTPPYMFTEEVALAAMRAHAAGESVDTRLLTETLELTATADMPD
FT EVRAKLHKITGLFLRDGGDAAGALAHLQRATQLDCQAGVKKEIERLERELKPKPEPQPK
FT AATRAPRKTRSVTPAKRGRPKKKAS"
FT variation 5361
FT /note="Mts52 mutation"
FT /replace="a"
FT /gene="M"
FT variation 5751
FT /note="Mam32 mutation"
FT /replace="t"
FT /gene="M"
FT CDS 6000..6509
FT /codon_start=1
FT /db_xref="SWISS-PROT:P25475"
FT /transl_table=11
FT /gene="L"
FT /function="capsid completion protein"
FT /product="gpL"
FT /protein_id="AAD03273.1"
FT /translation="MMTLIIPRKEAPVSGEGTVVIPQPAGDEPVIKNTFFFPDIDPKRV
FT RERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTRLADVPADDIDGESIK
FT VFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWRDMRWAVARIQGKPR
FT CIVSQI"
FT variation 6024
FT /note="Lam79 mutation"
FT /replace="t"
FT /gene="L"
FT variation 6240
FT /note="Lam9 mutation"
FT /replace="t"
FT /gene="L"
FT CDS 6509..6712
FT /codon_start=1
FT /db_xref="SWISS-PROT:P51772"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="X"
FT /function="essential tail gene"
FT /product="gpX"
FT /protein_id="AAD03274.1"
FT /translation="MKTFALQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGAVLPH
FT GTAVELPDVQTAPVAETVNLWE"
FT variation 6562
FT /note="Xam95 mutation"
FT /replace="g"
FT /gene="X"
FT CDS 6716..6997
FT /codon_start=1
FT /db_xref="SWISS-PROT:P51773"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="Y"
FT /function="holin; essential for host cell cell lysis"
FT /product="gpY"
FT /protein_id="AAD03275.1"
FT /translation="MTAEEKSVLSLFMIGVLIVVGKVLAGGEPITPRLFIGRMLLGGFV
FT SMVAGVVLVQFPDLSLPAVCGIGSMLGIAGYQVIEIAIQRRFKGRGKQ"
FT variation 6852
FT /note="Yam94 mutation"
FT /replace="a"
FT /gene="Y"
FT CDS 6997..7494
FT /codon_start=1
FT /db_xref="SWISS-PROT:P51771"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="K"
FT /function="endolysin; essential for host cell lysis"
FT /product="gpK"
FT /protein_id="AAD03276.1"
FT /translation="MPVINTHQNIAAFLDMLAVSEGTANHPLTKNRGYDVIVTGLDGKP
FT EIFTDYSDHPFAHGRPAKVFNRRGEKSTASGRYQQLYLFWPHYRKQLALPDFSPLSQDR
FT LAIQLIRERGALDDIRAGRIERAISRCRNIWASLPGAGYGQREHSLEKLVTVWRTAGGV
FT PA"
FT variation 7114
FT /note="Kts60 mutation"
FT /replace="a"
FT /gene="K"
FT variation 7126
FT /note="Kam218 mutation"
FT /replace="t"
FT /gene="K"
FT variation 7318
FT /note="Kam12 mutation"
FT /replace="t"
FT /gene="K"
FT variation 7322
FT /note="Kam76 mutation"
FT /replace="a"
FT /gene="K"
FT CDS 7509..7934
FT /codon_start=1
FT /db_xref="SWISS-PROT:P51769"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="lysA"
FT /function="nonessential; affects timing of lysis"
FT /product="LysA"
FT /protein_id="AAD03277.1"
FT /translation="MKKLSLSLMLNVSLALMLALSLIYPQSVAVNFVAAWAILATVICV
FT VAGGVGVYATEYVLERYGRELPPESLAVKIVTSLFLQPVPWRRRAAALVVVVATFISLV
FT AAGWIFTALIYLVVSLFFRLIRKACRQRLEGREPCQG"
FT variation 7694
FT /note="lysAam96 mutation"
FT /replace="g"
FT /gene="lysA"
FT CDS 7922..8347
FT /codon_start=1
FT /db_xref="SWISS-PROT:P51770"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="lysB"
FT /function="nonessential; affects timing of lysis"
FT /product="LysB"
FT /protein_id="AAD03278.1"
FT /translation="MSRLMIVLVVLLSLAVAGLFLVKHKNASLRASLDRANNVASGQQT
FT TITMLKNQLHVALTRADKNELAQVALRQELENAAKREAQREKTITRLLNENEDFRRWYG
FT ADLPDAVRRLHQRPACTDASDCPQRMPESEPLPDAGQ"
FT variation 8099..8100
FT /note="lysBam97 mutation"
FT /replace="ta"
FT /gene="lysB"
FT attenuator 8399..8417
FT /note="putative transcription attenuator; O operon"
FT CDS 8455..8922
FT /codon_start=1
FT /db_xref="SWISS-PROT:P36933"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="R"
FT /function="essential tail gene; tail completion"
FT /product="gpR"
FT /protein_id="AAD03279.1"
FT /translation="MLKPDSLRRALTDAVTVLKTNPDMLRIFVDNGSIASTLAASLSFE
FT KRYTLNVIVTDFTGDFDLLIVPVLAWLRENQPDIMTTDEGQKKGFTFYADINNDSSFDI
FT SISLMLTERTLVSEVDGALHVKNISEPPPPEPVTRPMELYINGELVSKWDE"
FT variation 8680
FT /note="Ram3 mutation"
FT /replace="t"
FT /gene="R"
FT variation 8710
FT /note="Ram42 mutation"
FT /replace="t"
FT /gene="R"
FT variation 8857
FT /note="Ram23 mutation"
FT /replace="t"
FT /gene="R"
FT CDS 8915..9367
FT /codon_start=1
FT /db_xref="SWISS-PROT:P36934"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="S"
FT /function="essential tail gene; tail completion"
FT /product="gpS"
FT /protein_id="AAD03280.1"
FT /translation="MNEFKRFEDRLTGLIESLSPSGRRRLSAELAKRLRQSQQRRVMAQ
FT KAPDGTPYAPRQQQSVRKKTGRVKRKMFAKLITSRFLHIRASPEQASMEFYGGKSPKIA
FT SVHQFGLSEENRKDGKKIDYPARPLLGFTGEDVQMIEEIILAHLER"
FT variation 9209
FT /note="Sam75 mutation"
FT /replace="t"
FT /gene="S"
FT variation 9213
FT /note="Sam89 mutation"
FT /replace="a"
FT /gene="S"
FT terminator 9397..9433
FT /note="putative rho-independent terminator for O operon"
FT CDS complement(9439..10224)
FT /codon_start=1
FT /db_xref="SWISS-PROT:P36935"
FT /transl_table=11
FT /gene="orf30"
FT /function="nonessential"
FT /product="Orf30"
FT /protein_id="AAD03281.1"
FT /translation="MVSYNVTNVWGLIVFFLCSFAVLAFFSFGKSNLMRLIAHYFNFGY
FT SDKKLKRLDREWRDIQLFKIINGINVSGIENVRMIQQGLIDGKLKTSYFFLTRIWGDIT
FT KPPHIIKTIIVILASIFYILLACYIHNEQSVIVRDATGIPYKNMMYYVYSDKVLLSFKN
FT KAVEFNKTYSLADCKRLQNVFIKDTLPEIACNKLLQLNEEDSEWLSQEIKDNNSHKKAL
FT LILSLVYFTSGLVIFLSYTKFFYANKKVLEYKASNKNHS"
FT misc_feature 10239..10266
FT /evidence=EXPERIMENTAL
FT /note="activator binding site; activation of pV promoter"
FT CDS 10308..10943
FT /codon_start=1
FT /db_xref="SWISS-PROT:P31340"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="V"
FT /function="baseplate assembly protein"
FT /product="gpV"
FT /protein_id="AAD03282.1"
FT /translation="MNTLANIQELARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWL
FT QWLTHRAGRSRTWWAPSVGEQVLILAVGGELDTAFVLPGIYSGDNPSPSVSADALHIRF
FT PDGAVIEYEPETSALTVSGIKTASVTASGSVTATVPVVMVKASTRVTLDTPEVVCTNRL
FT ITGTLEVQKGGTMRGNIEHTGGELSSNGKVLHTHKHPGDSGGTTGSPL"
FT misc_feature 10308
FT /evidence=EXPERIMENTAL
FT /note="transcription start site for V operon; encodes V,
FT W, J, I, H, G"
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FT /gene="V"
FT variation 10329
FT /note="Vam42, Vam203 and Vam205 mutations"
FT /replace="t"
FT /gene="V"
FT variation 10498
FT /note="Vts199 mutation"
FT /replace="a"
FT /gene="V"
FT CDS 10940..11287
FT /codon_start=1
FT /db_xref="SWISS-PROT:P51768"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="W"
FT /function="baseplate assembly protein"
FT /product="gpW"
FT /protein_id="AAD03283.1"
FT /translation="MTARYLGMNRSDGLTVTDLEHISQSIGDILRTPVGSRVMRRDYGS
FT LLASMIDQPQTPALELQIKVACYMAVLKWEPRVTLSSVTTARSFDGRMTVTLTGQHNDT
FT GQPLSLTIPVS"
FT variation 11237
FT /note="Wam50 mutation"
FT /replace="t"
FT /gene="W"
FT CDS 11292..12200
FT /codon_start=1
FT /db_xref="SWISS-PROT:P51767"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="J"
FT /function="baseplate assembly protein"
FT /product="gpJ"
FT /protein_id="AAD03284.1"
FT /translation="MPIIDLNQLPAPDVVEELDFESILAERKATLISLYPEDQQEAVAR
FT TLTLESEPLVKLLEENAYRELIWRQRVNEAARAVMLACAAGNDLDVIGANYNTTRLTIT
FT PADDSTIPPTPAVMESDTDYRLRIQQAFEGLSVAGSVGAYQYHGRSADGRVADISVTSP
FT SPACVTISVLSRENNGVASEDLLAVVRNALNGEDVRPVADRVTVQSAAIVEYQINATLY
FT LYPGPESEPIRAAAVKKLEAYITAQHRLGRDIRLSAIYAALHVEGVQRVELAAPLADIV
FT LNSTQASFCTEYRVVTGGSDE"
FT variation 11937
FT /note="Jam31 mutation"
FT /replace="t"
FT /gene="J"
FT CDS 12193..12723
FT /codon_start=1
FT /db_xref="SWISS-PROT:P26701"
FT /evidence=EXPERIMENTAL
FT /transl_table=11
FT /gene="I"
FT /function="baseplate assembly protein"
FT /product="gpI"
FT /protein_id="AAD03285.1"
FT /translation="MSDSRLLPTGSSPLEVAAAKACAEIEKTPVSIRELWNPDTCPANL
FT LPWLAWAFSVDRWDEKWPEATKRAVIRDAYFIHCHKGTIGAIRRVVEPLGYLINVTEWW
FT ENSDPPGTFRLDIGVLESGITEAMYQEMERLIADAKPASRHLIGLNITRDIPGYLFAGG
FT VAYDGDVITVYPG"
FT variation 12235
FT /note="Iam78 mutation"
FT /replace="t"
FT /gene="I"
FT CDS 12734..14743
FT /codon_start=1
FT /db_xref="SWISS-PROT:P26700"
FT /transl_table=11
FT /gene="H"
FT /function="probable tail fiber protein"
FT /product="gpH"
FT /protein_id="AAD03286.1"
FT /translation="MSIKFRTVITTAGAAKLAAATAPGRRKVGITTMAVGDGGGKLPVP
FT DAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLIAV
FT ANMAESYKPALAEGSGRWQTCRMVIIVSSVASVELTIDTTTVMATQDYVDDKIAEHEQS
FT RRHPDASLTAKGFTQLSSATNSTSETLAATPKAVKAAYDLANGKYTAQDATTARKGLVQ
FT LSSATNSTSETLAATPKAVKTVMDETNKKAPLNSPALTGTPTTPTARQGTNNTQIANTA
FT FVMAAIAALVDSSPDALNTLNELAAALGNDPNFATTMTNALAGKQPKDATLTALAGLAT
FT AADRFPYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNRAGNAVQKNGDTL
FT SGGLTFENDSILAWIRNTDWAKIGFKNDADGDTDSYMWFETGDNGNEYFKWRSRQSTTT
FT KDLMTLKWDALNILVNAVINGCFGVGTTNALGGSSIVLGDNDTGFKQNGDGILDVYANS
FT QRVFRFQNGVAIAFKNIQAGDSKKFSLSSSNTSTKNITFNLWGASTRPVVAELGDEAGW
FT HFYSQRNTDNSVIFAVNGQMQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYEKAGHTI
FT TGLRIIGEVDGDDEAIFRPIQKYINGTWYNVAQV"
FT variation 13994
FT /note="Ham72 mutation"
FT /replace="t"
FT /gene="H"
FT variation 14336
FT /note="Ham59 mutation"
FT /replace="t"
FT /gene="H"
FT CDS 14747..15274
FT /codon_start=1
FT /db_xref="SWISS-PROT:P26699"
FT /transl_table=11
FT /gene="G"
FT /function="probable tail fiber assembly protein"
FT /product="gpG"
FT /protein_id="AAD03287.1"
FT /translation="MQHLKNIKSGNPKTKEQYQLTKNFDVIWLWSEDGKNWYEEVKNFQ
FT PDTIKIVYDENNIIVAITRDASTLNPEGFSVVEVPDITSNRRADDSGKWMFKDGAVVKR
FT IYTADEQQQQAESQKAALLSEAENVIQPLERAVRLNMATDEERARLESWERYSVLVSRV
FT DPANPEWPEMPQ"
FT variation 14879
FT /note="Gam1 mutation"
FT /replace="t"
FT /gene="G"
FT variation 15294..17233
FT /note="del2 deletion"
FT /replace=""
FT terminator 15639..15666
FT /note="putative rho-independent terminator for V operon"
FT CDS complement(15675..17261)
FT /codon_start=1
FT /db_xref="SPTREMBL:P79669"
FT /note="cloned gene blocks growth of T5"
FT /transl_table=11
FT /gene="fun(Z)"
FT /function="nonessential; lysogenic conversion; confers
FT sensitivity to FUdR"
FT /product="Fun(Z)"
FT /protein_id="AAD03288.1"
FT /translation="MIPIKDLTLGYADAENYKRRENKELLNKVFIRDNHLSRLCEPNIS
FT FLVGEKGTGKTAYSIYLSNNNINNTLATTKYIRETEYQKFITLKSEKHLNLSDFSGIWK
FT VILYLLISKQVLDKEGKISKLLNYSKFSSLNDAIDEYYLKAFSPEIIQALSFVQESKVA
FT AELLHKHATLKGEERESLSFSESRFQINLFYIQKKFEEAFSQIRLSQNHILFIDGIDIR
FT PSSIPYDDYLECIKGLAHAVWEINNDFFPSIKGGKGRMKAVLLIRPDIFESIGLQNQNA
FT KIRDNSVFLDWRTEYVNHRSSQLFEVLDHLLRTQQDMALKKGQAWDHYFPWDSPNVHDN
FT YNHPTSFINFLRWSYYRPRDILRMLEIIKSHASGDDGKNQFSLDDFESPSMQRDYSNYL
FT LGEIKDHLSFYYGSEHYEIFLKFFEFLSGKDTFDYAEYLLAYKQLETHISSISTTKPKF
FT MTTANDFLQFLFGLNVICYIETTEDNNRFIRWCFRERSYANISPKIKTGMKYQIFYGLA
FT KSLNVGKALKK"
FT variation complement(15784)
FT /note="Z81su3 mutation"
FT /replace="a"
FT /gene="fun(Z)"
FT variation complement(15872)
FT /note="Z20 mutation"
FT /replace="t"
FT /gene="fun(Z)"
FT variation complement(15944)
FT /note="Z81 mutation"
FT /replace="t"
FT /gene="fun(Z)"
FT variation complement(15946)
FT /note="fun1 mutation"
FT /replace="t"
FT /gene="fun(Z)"
FT variation complement(16079)
FT /note="csZ150 mutation"
FT /replace="t"
FT /gene="fun(Z)"
FT variation complement(16266)
FT /note="fun99 mutation"
FT /replace="t"
FT /gene="fun(Z)"
FT variation 16267..17299
FT /note="del5 deletion"
FT /replace=""
FT variation complement(16638)
FT /note="csZ150 mutation"
FT /replace="a"
FT /gene="fun(Z)"
FT misc_feature 17555..17583
FT /evidence=EXPERIMENTAL
FT /note="activator binding site; activation of pF promoter"
FT misc_feature 17626..17628
FT /evidence=EXPERIMENTAL
FT /note="transcription start site for F operon; encodes FI,
FT FII, E, E', T, U, D"
FT CDS 17652..18842
FT /codon_start=1
FT /db_xref="SWISS-PROT:P22501"
FT /transl_table=11
FT /gene="FI"
FT /function="essential tail protein; tail sheath"
FT /product="gpFI"
FT /protein_id="AAD03289.1"
FT /translation="MSDYHHGVQVLEINEGTRVISTVSTAIVGMVCTASDADAETFPLN
FT KPVLITNVQSAISKAGKKGTLAASLQAIADQSKPVTVVMRVEDGTGDDEETKLAQTVSN
FT IIGTTDENGQYTGLKAMLAAESVTGVKPRILGVPGLDTKEVAVALASVCQKLRAFGYIS
FT AWGCKTISEVKAYRQNFSQRELMVIWPDFLAWDTVTSTTATAYATARALGLRAKIDQEQ
FT GWHKTLSNVGVNGVTGISASVFWDLQESGTDADLLNESGVTTLIRRDGFRFWGNRTCSD
FT DPLFLFENYTRTAQVVADTMAEAHMWAVDKPITATLIRDIVDGINAKFRELKTNGYIVD
FT ATCWFSEESNDAETLKAGKLYIDYDYTPVPPLENLTLRQRITDKYLANLVTSVNSN"
FT variation 18183
FT /note="Fam4 mutation"
FT /replace="t"
FT /gene="FI"
FT CDS 18855..19373
FT /codon_start=1
FT /db_xref="SWISS-PROT:P22502"
FT /transl_table=11
FT /gene="FII"
FT /function="essential tail protein; tail tube"
FT /product="gpFII"
FT /protein_id="AAD03290.1"
FT /translation="MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNG
FT SAPVDLGLDDDALSMEWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVE
FT VVMRGRQKEIDTGEGKQGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRL
FT EQHRRNIGL"
FT CDS 19430..19705
FT /codon_start=1
FT /db_xref="SPTREMBL:O64313"
FT /transl_table=11
FT /gene="E"
FT /function="essential tail protein"
FT /product="gpE"
FT /protein_id="AAD03291.1"
FT /translation="MNKENVITLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSE
FT VDALIKVLPRMTAPMLTEQEVAALELPDLVALAGKVVGFLSPNSVQ"
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FT CDS join(19430..19684,19684..19857)
FT /codon_start=1
FT /db_xref="SPTREMBL:O64312"
FT /note="shares amino terminus with gpE; -1 frameshift"
FT /transl_table=11
FT /gene="E+E'"
FT /function="essential tail protein"
FT /product="gpE+E'"
FT /protein_id="AAD03292.1"
FT /translation="MNKENVITLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSE
FT VDALIKVLPRMTAPMLTEQEVAALELPDLVALAGKVVGFLVAELGAVTFPKNLSVDDLM
FT ADVAVIFHWPPSELYPMSLTELITWREKALRRSGNTNE"
FT variation 19473
FT /note="Ets55 mutation"
FT /replace="a"
FT /gene="E"
FT variation 19619
FT /note="Eam30 mutation"
FT /replace="t"
FT /gene="E"
FT misc_feature 19685
FT /evidence=EXPERIMENTAL
FT /note="site of -1 translational frameshift"
FT /gene="E+E'"
FT CDS 19850..22297
FT /codon_start=1
FT /db_xref="SPTREMBL:O64314"
FT /transl_table=11
FT /gene="T"
FT /function="essential tail protein; putative tail length
FT determinator"
FT /product="gpT"
FT /protein_id="AAD03293.1"
FT /translation="MSNNVKLQVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLREL
FT NGHASRIEGFRKTSAQLAVTGHALEKARQEAEALATQFKNTERPTRAQAKVLESAKRAA
FT EDLQAKYNRLTDSVKRQQRELAAVGINTRNLAHDEQGLKNRISETTAQLNRQRDALVRV
FT SAQQAKLNAVKQRYQAGKELAGNMASVGAAGVGIAAAGTMAGVKLLMPGYEFAQKNSEL
FT QAVIGVAKDSAEMAALRKQARQLGDNTAASADDAAGAQIIIAKAGGDVDAIQAATPVTL
FT NMALANRRTMEENAALLMGMKSAFQLSNDKVAHIGDVLSMTMNKTAADFDGMSDALTYA
FT APVAKNAGVSIEETAAMVGALHDAKITGSMAGTGSRAVLSRLQAPTGKAWDALKELGVK
FT TSDSKGNTRPIFTILKEMQASFEKNRLGTAQQAEYMKTIFGEEASSAAAVLMTAASTGK
FT LDKLTAAFKASDGKTAELVNIMQDNLGGDFKAFQSAYEAVGTDLFDQQEGALRKLTQTA
FT TKYVLKLDGWIQKNKSLASTIGIIAGGALALTGIIGAIGLVAWPVITGINAIIAAAGAM
FT GAVFTTVGSAVMTAIGAISWPVVAVVAAIVAGALLIRKYWEPVSAFFGGVVEGLKAAFA
FT PVGELFTPLKPVFDWLGEKLQAAWQWFKNLIAPVKATQDTLNRCRDTGVMFGQALADAL
FT MLPLNAFNKLRSGIDWVLEKLGVINKESDTLDQTAARTHTATYGTGDYIPATSSYAGYQ
FT AYQPVTAPAGRSYVDQSKNEYHISLTGGTAPGTQLDRQLQDALEKYERDKRARARASMM
FT HDG"
FT variation 20669
FT /note="Tam215 mutation"
FT /replace="t"
FT /gene="T"
FT variation 21101
FT /note="Tam5 mutation"
FT /replace="t"
FT /gene="T"
FT variation 21528
FT /note="Tam64 mutation"
FT /replace="a"
FT /gene="T"
FT CDS 22312..22791
FT /codon_start=1
FT /db_xref="SPTREMBL:O64315"
FT /transl_table=11
FT /gene="U"
FT /function="essential tail protein"
FT /product="gpU"
FT /protein_id="AAD03294.1"
FT /translation="MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGV
FT GEENITLAGVLYPELTGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSI
FT FFADGTPRKIDFTLSLTRVDESLAALYGDIGKQAESLIGKAGSMATRFTGMTGAG"
FT variation 22363
FT /note="Uam25 mutation"
FT /replace="t"
FT /gene="U"
FT variation 22501
FT /note="Uam77 and Uam92 mutations"
FT /replace="t"
FT /gene="U"
FT CDS 22791..23954
FT /codon_start=1
FT /db_xref="SWISS-PROT:P10312"
FT /transl_table=11
FT /gene="D"
FT /function="essential tail protein"
FT /product="gpD"
FT /protein_id="AAD03295.1"
FT /translation="MLDALTFDAGSTLTPDYMLMLDSRDITGNISDRLMSMTLTDNRGF
FT EADQLDIELNDADGQVGLPVRGAVLTVYIGWKGFALVCKGKFTVDEVEHRGAPDVVTIR
FT ARSADFRGTLNSRREGSWHDTTLGAIVKAIATRNRLEASVAPSLAGIKIPHIDQSQESD
FT AKFLTRLAERNGGEVSVKMGKLLFLKAGQGVTASGKKIPQVTITRSDGDRHHFAIADRG
FT AYTGVTAKWLHTKDPKPQKQKVKLKRKKKEKHLRALEHPKAKPVRQKKAPKVPEAREGE
FT YMAGEADNVFALTTVYATKAQAMRAAQAKWDKLQRGVAEFSISLATGRADIYTETPVKV
FT SGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEVRLSDVEYETEDDE"
FT variation 23592
FT /note="Dam6 mutation"
FT /replace="t"
FT /gene="D"
FT -35_signal 23973..23975
FT -10_signal 23996..24002
FT prim_transcript 24008..24288
FT /note="putative"
FT CDS 24036..24254
FT /codon_start=1
FT /db_xref="SWISS-PROT:P08762"
FT /transl_table=11
FT /gene="ogr"
FT /product="Ogr"
FT /protein_id="AAD03296.1"
FT /translation="MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESV
FT QRYIVKPGEVHAVRPHPLPSGQQIMWM"
FT variation 24148..25274
FT /note="del15 deletion"
FT /replace=""
FT variation 24160
FT /note="ogr1 and ogr52 mutations"