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/*
* This file is part of Artemis
*
* Copyright (C) 2013 Genome Research Limited
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
*/
package uk.ac.sanger.artemis.components;
import static org.junit.Assert.assertTrue;
import org.junit.Before;
import org.junit.Test;
import java.awt.GraphicsEnvironment;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.HashMap;
import java.util.Properties;
public class ProjectPropertyTest
{
private HashMap<String, HashMap<String, String>> projects;
@Before
public void loadProperties()
{
InputStream ins =
this.getClass().getClassLoader().getResourceAsStream("data/project.properties");
try
{
final Properties projectProps = new Properties();
projectProps.load(ins);
ins.close();
projects = ProjectProperty.getProjectMap(projectProps);
}
catch (IOException e)
{
org.junit.Assert.fail(e.getMessage());
}
}
@Test
public void projectContent1()
{
// ignore if in headless mode with no x11
if(GraphicsEnvironment.getLocalGraphicsEnvironment().isHeadless())
return;
assertTrue("Styphi project", projects.containsKey("Styphi"));
if(projects.containsKey("Styphi"))
{
HashMap<String, String> thisProject = projects.get("Styphi");
assertTrue("Styphi project sequence", thisProject.containsKey("sequence"));
assertTrue("Styphi project annotation", thisProject.containsKey("annotation"));
}
}
@Test
public void projectContent2()
{
// ignore if in headless mode with no x11
if(GraphicsEnvironment.getLocalGraphicsEnvironment().isHeadless())
return;
assertTrue("PF3D7 project", projects.containsKey("PF3D7"));
if(projects.containsKey("PF3D7"))
{
HashMap<String, String> thisProject = projects.get("PF3D7");
assertTrue("Styphi project sequence", thisProject.containsKey("sequence"));
assertTrue("Styphi project bam", thisProject.containsKey("bam"));
}
}
@Test
public void launch()
{
// ignore if in headless mode with no x11
if(GraphicsEnvironment.getLocalGraphicsEnvironment().isHeadless())
return;
try
{
ProjectProperty pp = new ProjectProperty();
}
catch(Exception e)
{
org.junit.Assert.fail(e.getMessage());
}
}
@Test
public void writeAndReadProperties()
{
// ignore if in headless mode with no x11
if(GraphicsEnvironment.getLocalGraphicsEnvironment().isHeadless())
return;
try
{
final File tmpFile = File.createTempFile("artemis.props", ".tmp");
ProjectProperty.writeProperties(tmpFile, projects);
final InputStream ins = new FileInputStream(tmpFile);
final Properties projectProps = new Properties();
projectProps.load(ins);
ins.close();
final HashMap<String, HashMap<String, String>>
tmpProjects = ProjectProperty.getProjectMap(projectProps);
for (String p: projects.keySet())
{
assertTrue("Contains "+p, tmpProjects.containsKey(p));
HashMap<String, String> props = projects.get(p);
HashMap<String, String> tmpProps = tmpProjects.get(p);
for(final String key: props.keySet())
{
// test property key (e.g. title, sequence, bam)
assertTrue("Contains property "+key, tmpProps.containsKey(key));
// test values
assertTrue("Contains property "+key+" = "+props.get(key),
props.get(key).equals(tmpProps.get(key)));
}
}
}
catch(IOException e)
{
org.junit.Assert.fail(e.getMessage());
}
}
}