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/* FeaturePatternPredicate.java
*
* created: Tue Aug 6 2002
*
* This file is part of Artemis
*
* Copyright (C) 2001 Genome Research Limited
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
* $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/FeaturePatternPredicate.java,v 1.1 2004-06-09 09:44:43 tjc Exp $
*/
package uk.ac.sanger.artemis;
import uk.ac.sanger.artemis.sequence.AminoAcidSequence;
/**
* Each object of this class can be used to test Feature objects to see if
* they contain a given sequence pattern. See FeaturePredicate.
*
* @author Kim Rutherford <kmr@sanger.ac.uk>
* @version $Id: FeaturePatternPredicate.java,v 1.1 2004-06-09 09:44:43 tjc Exp $
**/
public class FeaturePatternPredicate implements FeaturePredicate {
/**
* Creata a new FeaturePatternPredicate object which will test for the
* presence of the given AminoAcidSequence in the translation of the Feature
**/
public FeaturePatternPredicate (final AminoAcidSequence motif_pattern) {
this.motif_pattern = motif_pattern;
}
/**
* Test the given Feature against this FeaturePredicate
* @param feature The Feature to test the predicate against.
* @return Return true if and only if the given Feature contains the given
* sequence pattern.
**/
public boolean testPredicate (final Feature feature) {
return motif_pattern.checkForMatch (feature.getTranslation ());
}
/**
* The AminoAcidSequence that was passed to the constructor.
**/
private AminoAcidSequence motif_pattern;
}