Skip to content
Snippets Groups Projects
Select Git revision
  • master default protected
  • gh-pages
  • build-process-upgrade-merge
  • eb-apollo-generate_names
  • BT5_travis
  • hello_github
  • v18.1.0
  • v18.0.3
  • v18.0.2
  • v18.0.1
  • v18.0.0
  • v18.0.0-RC1
  • v17.0.1
  • v17.0.0
  • v16.0.17
  • v16.0.0
  • v15.0.0
  • v14.0.0
  • v13.2.0
19 results

README.md

Blame
    • README.md 3.53 KiB

    The Artemis Software

    The Artemis Software is a set of software tools for genome browsing and annotation.

    Build Status
    License: GPL v3
    status
    status
    status
    status
    status
    status
    status
    status

    Contents

    Introduction

    The Artemis Software includes:

    • Artemis
    • ACT
    • BamView
    • DNAPlotter

    Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and Windows systems. It can read EMBL and GENBANK database entries or sequence in FASTA, indexed FASTA or raw format. Other sequence features can be in EMBL, GENBANK or GFF format.

    ACT is a free tool for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and their annotation.

    For further information, please see the Artemis GitHub page

    Installation

    For instructions on how to install Artemis, please see the Artemis manual.

    Usage

    For instructions please see the Artemis manual

    License

    Artemis is free software, licensed under GPLv3.

    For more information on how to download Artemis, please see the Artemis GitHub page

    Documentation

    The Artemis user manual is at: http://www.sanger.ac.uk/science/tools/artemis

    The ACT user manual is at: http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act

    The DNA plotter user manual is at: http://www.sanger.ac.uk/science/tools/dnaplotter

    The BAM View user manual is at: http://www.sanger.ac.uk/science/tools/bamview