ensembl.idl

module Ensembl {
  module artemis {

    exception RequestedSequenceTooLong { };
    exception NoEntry { string reason; };

    interface BioSequence {
      string getSubSequence(in long start,in long end) raises (RequestedSequenceTooLong);
      long length();
      long max_sequence_request();
    };
    
    struct Qualifier {
	string name;
	sequence<string> values;
    };

    typedef sequence <Qualifier> QualifierList;

    interface Feature {
	string getKey();
	string getLocation();
	QualifierList getQualifiers();
    };

    typedef sequence <Feature> FeatureList;

    interface Entry {
	string getName(); // accession number usually.
	long getFeatureCount(); 
	FeatureList getAllFeatures();
	BioSequence getSequence();
    };

    typedef sequence<string> QualifierDefinitionList;
    struct FeatureDefinition {
      string key;
      QualifierDefinitionList qualifiers;
    };
    typedef sequence<FeatureDefinition> FeatureDefinitionList;

    typedef sequence<string> EntryNameList;

    interface DB {
      Entry getEntry(in string entryname) raises (NoEntry);
      EntryNameList getallEntryNames();

      // coordination of the ORB.
      FeatureDefinitionList getFeatureDefinitionList();
    };
  };
};