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key_mapping

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    Added uORF, sORF and tnaORF as extra keys
    Fatima Silva authored
    563892e3
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    user avatar 563892e3
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    key_mapping 1.91 KiB 
    # CHADO (SO) database key mappings (used for writing out to file)
#
# CHADO                                    map to 	    qualifier (optional)
pseudogenic_transcript                     mRNA            pseudogene=unknown
pseudogenic_exon                           CDS             pseudogene=unknown
pseudogene                                 gene            pseudogene=unknown
polypeptide_motif                          CDS_motif
five_prime_UTR                             5'UTR
three_prime_UTR                            3'UTR
polypeptide_domain                         CDS_domain
region                                     misc_feature
remark                                     misc_feature
sequence_difference                        misc_feature
SECIS_element                              misc_feature    note=SECIS_element
contig                                     source
PCR_product                                misc_feature    note=PCR_product
dinucleotide_repeat_microsatellite_feature misc_feature    note=dinucleotide_repeat_microsatellite_feature
EST_match                                  misc_feature    note=EST_match
match_part                                 misc_feature    note=match_part
direct_repeat                              repeat_region   rpt_type=direct
polypeptide_domain                         misc_feature
centromere                                 misc_feature    note=centromere
modified_amino_acid_feature                misc_feature    note=modified_amino_acid_feature
snRNA                                      ncRNA           ncRNA_class=snRNA
snoRNA                                     ncRNA           ncRNA_class=snoRNA
nucleotide_match                           misc_feature    note=nucleotide_match
uORF                                       misc_feature    note=uORF
sORF                                       misc_feature    note=sORF
tnaORF                                     misc_feature    note=tnaORF