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Feature.xml

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  • feature_keys 9.79 KiB
    # All feature keys and qualifiers for EMBL/GenBank feature tables
    
    # From: http://www.ebi.ac.uk/~faruque/art/keyqual.txt
    
    # key           Qualifiers (@=mandatory)
    # =======       ========================
    
    -10_signal      allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag operon partial standard_name
    -35_signal      allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag operon partial standard_name
    3'UTR           allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name trans_splicing
    5'UTR           allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name trans_splicing
    CAAT_signal     allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial
    CDS             EC_number allele artificial_location citation codon_start db_xref exception experiment function gene gene_synonym inference locus_tag map note number old_locus_tag operon partial product protein_id pseudogene ribosomal_slippage standard_name trans_splicing transl_except transl_table translation
    C_region        allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    D-loop          allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial
    D_segment       allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    GC_signal       allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial
    J_segment       allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    LTR             allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    N_region        allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    RBS             allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    STS             allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    S_region        allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    TATA_signal     allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial
    V_region        allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    V_segment       allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    assembly_gap    @gap_type @estimated_length linkage_evidence
    attenuator      allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag operon partial phenotype
    enhancer        allele bound_moiety citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    exon            EC_number allele citation db_xref experiment function gene gene_synonym inference locus_tag map note number old_locus_tag partial product pseudogene standard_name
    gap             @estimated_length experiment inference map note
    gene            allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial phenotype product pseudogene standard_name trans_splicing
    iDNA            allele citation db_xref experiment function gene gene_synonym inference locus_tag map note number old_locus_tag partial standard_name
    intron          allele citation db_xref experiment function gene gene_synonym inference locus_tag map note number old_locus_tag partial pseudogene standard_name
    mRNA            allele artificial_location citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial product pseudogene standard_name trans_splicing
    mat_peptide     EC_number allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    misc_RNA        allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial product pseudogene standard_name trans_splicing
    misc_binding    @bound_moiety allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial
    misc_difference allele citation clone compare db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial phenotype replace standard_name
    misc_feature    allele citation db_xref experiment function gene gene_synonym inference locus_tag map note number old_locus_tag partial phenotype product pseudogene standard_name
    misc_recomb     allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    misc_signal     allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial phenotype standard_name
    misc_structure  allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    mobile_element  @mobile_element_type allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial rpt_family rpt_type standard_name
    modified_base   @mod_base allele citation db_xref experiment frequency gene gene_synonym inference locus_tag map note old_locus_tag
    ncRNA           @ncRNA_class allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial product pseudogene standard_name trans_splicing
    old_sequence    allele citation compare db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial replace
    operon          @operon allele citation db_xref experiment function inference map note phenotype pseudogene standard_name
    oriT            allele bound_moiety citation db_xref direction experiment gene gene_synonym inference locus_tag map note old_locus_tag rpt_family rpt_type rpt_unit_range rpt_unit_seq standard_name
    polyA_signal    allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial
    polyA_site      allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag
    precursor_RNA   allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial product standard_name trans_splicing
    prim_transcript allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial standard_name
    primer_bind     PCR_conditions allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    promoter        allele bound_moiety citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial phenotype pseudogene standard_name
    protein_bind    @bound_moiety allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial standard_name
    rRNA            allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial product pseudogene standard_name
    rep_origin      allele citation db_xref direction experiment gene gene_synonym inference locus_tag map note old_locus_tag partial standard_name
    repeat_region   allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial rpt_family rpt_type rpt_unit_range rpt_unit_seq satellite standard_name
    sig_peptide     allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    source          @mol_type @organism PCR_primers bio_material cell_line cell_type chromosome citation clone clone_lib collected_by collection_date country cultivar culture_collection db_xref dev_stage ecotype environmental_sample focus frequency germline haplogroup haplotype host identified_by isolate isolation_source lab_host lat_lon macronuclear map mating_type note organelle plasmid pop_variant proviral rearranged segment serotype serovar sex specimen_voucher strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic variety
    stem_loop       allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial standard_name
    tRNA            allele anticodon citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag operon partial product pseudogene standard_name trans_splicing
    terminator      allele citation db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag operon partial standard_name
    tmRNA           allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag product pseudogene standard_name tag_peptide
    transit_peptide allele citation db_xref experiment function gene gene_synonym inference locus_tag map note old_locus_tag partial product pseudogene standard_name
    unsure          allele citation compare db_xref experiment gene gene_synonym inference locus_tag map note old_locus_tag replace
    variation       allele citation compare db_xref experiment frequency gene gene_synonym inference locus_tag map note old_locus_tag partial phenotype product replace standard_name