FeatureLoc.xml

<?xml version="1.0" encoding="UTF-8" ?> 
 
<!DOCTYPE sqlMap 
    PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN" 
    "http://ibatis.apache.org/dtd/sql-map-2.dtd"> 
 

<sqlMap namespace="FeatureLoc"> 
 

     
     <typeAlias alias="FeatureLoc"
        type="org.gmod.schema.sequence.FeatureLoc"/>
        
     <resultMap id="map-location-lazy"
                class="FeatureLoc">
        <result property="srcFeatureId" column="srcfeature_id" nullValue="-999" />
        <result property="featureBySrcFeatureId" column="{featureId=srcfeature_id}" 
                                                 select="getLazyFeatureById" />
        <result property="fmin"   column="fmin"   nullValue="-999" />
        <result property="fmax"   column="fmax"   nullValue="-999" />
        <result property="strand" column="strand" nullValue="0" />
        <result property="phase"  column="phase" />
        <result property="residueInfo"  column="residue_info"/>
        <result property="locGroup"  column="locgroup"/>
        <result property="rank"      column="rank"/>
     </resultMap>
     
	 <resultMap id="map-location"
                class="FeatureLoc">
        <result property="srcFeatureId" column="srcfeature_id" nullValue="-999" />
        <result property="featureBySrcFeatureId" column="{featureId=srcfeature_id}" 
                                                 select="getFeatureById" />
        <result property="fmin"   column="fmin"   nullValue="-999" />
        <result property="fmax"   column="fmax"   nullValue="-999" />
        <result property="strand" column="strand" nullValue="0" />
        <result property="phase"  column="phase"  nullValue="0" />
        <result property="residueInfo"  column="residue_info"/>
        <result property="locGroup"  column="locgroup"/>
        <result property="rank"      column="rank"/>
     </resultMap>
	  
     <!--  select featureloc -->
     <select id="getFeatureLoc" resultMap="map-location-lazy">
       SELECT srcfeature_id, fmin, fmax, strand, phase, residue_info, locgroup, rank
       FROM  featureloc
       WHERE featureloc.feature_id=#id#
     </select>
     
     <!-- used to find match meature from the subject and query featureId -->
     <select id="getFeatureIdBySrcFeatureId" parameterClass="Feature" resultClass="java.lang.Integer">
        <iterate property="featureLocsForFeatureId" conjunction="INTERSECT" >
           SELECT feature_id FROM featureloc WHERE srcfeature_id=#featureLocsForFeatureId[].featureBySrcFeatureId.featureId#  
        </iterate>
     </select>
     
    <!--  WRITE BACK METHODS  -->
    
    <!--  UPDATE  -->
    <update id="updateFeatureLoc" 
            parameterClass="FeatureLoc">
      UPDATE featureloc
      SET fmin=$fmin$, fmax=$fmax$, rank=$rank$, strand=$strand$
      <isNotNull property="phase">
        , phase=$phase$
      </isNotNull>
      <isNull property="phase">
        , phase=NULL
      </isNull>
      WHERE
        <isGreaterThan property="featureByFeatureId.featureId" compareValue="0">
          feature_id=$featureByFeatureId.featureId$
        </isGreaterThan>
        <isLessEqual property="featureByFeatureId.featureId" compareValue="0">
           <isNotNull property="featureByFeatureId.uniqueName">
             feature_id=(SELECT feature_id FROM feature WHERE uniquename=#featureByFeatureId.uniqueName#)
           </isNotNull>
        </isLessEqual>
    </update>
   
   <update id="updateFeatureLocByChangingSequence" 
            parameterClass="uk.ac.sanger.artemis.chado.FeatureForUpdatingResidues">
      UPDATE featureloc
      SET 
       <isNotNull property="newSubSequence">
         fmin=fmin+$length$, fmax=fmax+$length$
       </isNotNull>
       <isNull property="newSubSequence">
         fmin=fmin-$length$, fmax=fmax-$length$
       </isNull>
      WHERE fmin >= $startBase$ AND srcfeature_id=$featureId$
    </update>
   
    <insert id="insertFeatureLoc" 
            parameterClass="FeatureLoc">
      INSERT INTO featureloc
        ( featureloc_id, feature_id, srcfeature_id, fmin, fmax, strand, rank
          <isNotNull property="phase">
           , phase
          </isNotNull> 
        )
      VALUES
        ( nextval('featureloc_featureloc_id_seq'),
          $featureByFeatureId.featureId$,
          $featureBySrcFeatureId.featureId$,
          $fmin$,
          $fmax$,
          $strand$,
          $rank$
          <isNotNull property="phase">
            , $phase$
          </isNotNull>
        )
    </insert>
         
</sqlMap>