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qualifier_types 4.12 KiB
# Feature qualifiers for EMBL/GenBank feature tables
#
# From: http://www.ebi.ac.uk/~faruque/art/keyqual.txt
#
# valid qualifier types are:
# (::) (text:text,text:text)
# EC "n.n.n.n"
# feature dbname::accno:location
# item single text item
# list one of the listed values
# modbase one of the stored modbase values
# none no value
# number nn
# (other) (text)
# location a valid location range (or feature label)
# real n.n within specified range
# ref [nn]
# text any text, no quotes added, spaces allowed if quoted
# "text" quoted text, double any contained quotes
# "opt" optional quoted text, double any contained quotes
# "list" quoted text, list of accepted values
#
# if not specified, the default is text (so anything is accepted)
#
# Name required Type Value(s) ..
allele no "text"
anticodon yes (::) pos aa
bound_moiety no "text"
cell_line no "text"
cell_type no "text"
chromosome no "opt"
citation no ref
clone no "text"
clone_lib no "text"
codon no (::) seq aa
codon_start yes number 1 3
cons_splice yes (::) 5'site 3'site
country no "text"
cultivar no "text"
db_xref no "text"
dev_stage no "text"
direction yes list LEFT RIGHT BOTH
ecotype no "text"
EC_number no "text"
environmental_sample no none
estimated_length no "text"
evidence yes list EXPERIMENTAL NOT_EXPERIMENTAL
exception no "text"
focus no none
frequency yes real 0.0 1.0
function yes "text"
gene no "text"
germline yes none
haplotype no "text"
insertion_seq no "text"
isolation_source no "text"
isolate no "text"
kinetoplast no "opt"
label yes item
lab_host no "text"
locus_tag no "text"
macronuclear no none
map no "text"
mod_base no modbase
mol_type no "text"
note no "text"
number yes number 1 99999999
operon no "text"
organell no "text"
organism yes "text"
partial yes none
PCR_conditions no "text"
phenotype no "text"
plasmid no "text"
pop_variant no "text"
product no "text"
protein_id no "text"
proviral yes none
pseudo yes none
rearranged yes none
replace no "text"
rpt_family no "text"
rpt_type no list TANDEM INVERTED FLANKING TERMINAL DIRECT \
DISPERSED OTHER
rpt_unit no "text"
segment no "text"
sequenced_mol no "list" "cDNA" "cDNA to genomic RNA" \
"cDNA to mRNA" "cDNA to other RNA" \
"cDNA to rRNA" "DNA" "mRNA" \
"RNA" "rRNA" "scRNA" "snRNA" "tRNA"
serotype no "text"
serovar no "text"
sex no "text"
specific_host no "text"
specimen_voucher no "text"
standard_name no "text"
strain no "text"
sub_clone no "text"
sub_species no "text"
sub_strain no "text"
tissue_lib no "text"
tissue_type no "text"
transgenic no "text"
translation no "text"
transl_except no (::) pos aa
transl_table no number 1 11
transposon no "text"
usedin no feature
variety no "text"
virion no none