new log4j

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@5545 ee4ac58c-ac51-4696-9907-e4b3aa274f04

Makefile

 # This is a GNU Makefile for Artemis
 
-# $Header: //tmp/pathsoft/artemis/Makefile,v 1.26 2007-01-25 08:32:50 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/Makefile,v 1.27 2007-03-01 14:37:57 tjc Exp $
 
 SHELL=/bin/sh
 
@@ -8,7 +8,7 @@ SHELL=/bin/sh
 
 JAVAC := javac -source 1.3 -target 1.3 $(OPT_FLAGS) $(EXTRA_FLAGS)
 
-REAL_CLASSPATH := CLASSPATH=lib/biojava.jar:lib/jobcontrol.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.0.677.jar:lib/ibatis/log4j-1.2.13.jar:lib/chado-14-interface.jar:.
+REAL_CLASSPATH := CLASSPATH=lib/biojava.jar:lib/jobcontrol.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.0.677.jar:lib/ibatis/log4j-1.2.14.jar:lib/chado-14-interface.jar:.
 
 NAMES:= \
 	uk/ac/sanger/artemis/OptionChangeListener \

act

@@ -7,7 +7,7 @@
 # /usr/local/bin/ or elsewhere.
 
 
-# $Header: //tmp/pathsoft/artemis/act,v 1.12 2007-01-25 08:49:06 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/act,v 1.13 2007-03-01 14:37:40 tjc Exp $
 
 # resolve links - $0 may be a link
 PRG=$0
@@ -35,7 +35,7 @@ CLASSPATH=$ACT_HOME:$ACT_HOME/lib/JacORB.jar:$ACT_HOME/lib/jemAlign.jar:$ACT_HOM
 CLASSPATH=$CLASSPATH:$ACT_HOME/lib/j2ssh/commons-logging.jar:$ACT_HOME/lib/j2ssh/j2ssh-core.jar:$ACT_HOME/lib/j2ssh/
 
 # iBatis jars
-CLASSPATH=$CLASSPATH:$ACT_HOME/lib/ibatis/ibatis-2.3.0.677.jar:$ACT_HOME/lib/ibatis/:$ACT_HOME/lib/ibatis/log4j-1.2.13.jar:$ACT_HOME/lib/ibatis/cglib-nodep-2.2_beta1.jar:$ACT_HOME/lib/retrotranslator-runtime-1.1.0.jar
+CLASSPATH=$CLASSPATH:$ACT_HOME/lib/ibatis/ibatis-2.3.0.677.jar:$ACT_HOME/lib/ibatis/:$ACT_HOME/lib/ibatis/log4j-1.2.14.jar:$ACT_HOME/lib/ibatis/cglib-nodep-2.2_beta1.jar:$ACT_HOME/lib/retrotranslator-runtime-1.1.0.jar
 
 export CLASSPATH
 

art

@@ -6,7 +6,7 @@
 # necessary a symbolic link can be made to this script from
 # /usr/local/bin/ or elsewhere.
 
-# $Header: //tmp/pathsoft/artemis/art,v 1.20 2007-01-25 08:47:14 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/art,v 1.21 2007-03-01 14:37:47 tjc Exp $
 
 # resolve links - $0 may be a link
 PRG=$0
@@ -34,7 +34,7 @@ CLASSPATH=$ARTEMIS_HOME:$ARTEMIS_HOME/lib/biojava.jar:$ARTEMIS_HOME/lib/jemAlign
 CLASSPATH=$CLASSPATH:$ARTEMIS_HOME/lib/j2ssh/commons-logging.jar:$ARTEMIS_HOME/lib/j2ssh/j2ssh-core.jar:$ARTEMIS_HOME/lib/j2ssh/
 
 # iBatis jars
-CLASSPATH=$CLASSPATH:$ARTEMIS_HOME/lib/ibatis/ibatis-2.3.0.677.jar:$ARTEMIS_HOME/lib/ibatis/:$ARTEMIS_HOME/lib/ibatis/log4j-1.2.13.jar:$ARTEMIS_HOME/lib/ibatis/cglib-nodep-2.2_beta1.jar:$ARTEMIS_HOME/lib/retrotranslator-runtime-1.1.0.jar
+CLASSPATH=$CLASSPATH:$ARTEMIS_HOME/lib/ibatis/ibatis-2.3.0.677.jar:$ARTEMIS_HOME/lib/ibatis/:$ARTEMIS_HOME/lib/ibatis/log4j-1.2.14.jar:$ARTEMIS_HOME/lib/ibatis/cglib-nodep-2.2_beta1.jar:$ARTEMIS_HOME/lib/retrotranslator-runtime-1.1.0.jar
 export CLASSPATH