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Commit 077e3fb8 authored by tjc's avatar tjc
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remove jars chado and retrotranslator 

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15597 ee4ac58c-ac51-4696-9907-e4b3aa274f04
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Makefile
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...@@ -8,7 +8,7 @@ SHELL=/bin/sh ...@@ -8,7 +8,7 @@ SHELL=/bin/sh
JAVAC := javac -source 1.5 -target 1.5 $(OPT_FLAGS) $(EXTRA_FLAGS) JAVAC := javac -source 1.5 -target 1.5 $(OPT_FLAGS) $(EXTRA_FLAGS)
REAL_CLASSPATH := CLASSPATH=lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/chado-14-interface.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/picard/sam.jar:. REAL_CLASSPATH := CLASSPATH=lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/picard/sam.jar:.
NAMES:= \ NAMES:= \
uk/ac/sanger/artemis/OptionChangeListener \ uk/ac/sanger/artemis/OptionChangeListener \
...@@ -245,7 +245,7 @@ manual : ...@@ -245,7 +245,7 @@ manual :
CLASS_FILES := `find org uk nsdb type seqdb -name '*.class' -print` CLASS_FILES := `find org uk nsdb type seqdb -name '*.class' -print`
OTHER_FILES := `find images/PSUlogo.gif images/icon.gif images/helix.gif images/sanger-centre.gif COPYING README` OTHER_FILES := `find images/PSUlogo.gif images/icon.gif COPYING README`
dist : dist :
rm -rf artemis_compiled.tar.gz tar_build rm -rf artemis_compiled.tar.gz tar_build
...@@ -253,7 +253,7 @@ dist : ...@@ -253,7 +253,7 @@ dist :
mkdir tar_build/artemis mkdir tar_build/artemis
rm -f artemis_compiled_latest.tar.gz rm -f artemis_compiled_latest.tar.gz
tar cf - $(OTHER_FILES) act art etc | (cd tar_build/artemis; tar xf -) tar cf - $(OTHER_FILES) act art etc | (cd tar_build/artemis; tar xf -)
tar cf - artemis_sqlmap dnaplotter uk nsdb type seqdb lib | (cd tar_build/artemis; tar xf -) tar cf - artemis_sqlmap dnaplotter uk org nsdb type seqdb lib | (cd tar_build/artemis; tar xf -)
(cd tar_build; find . -name 'CVS' -print | xargs rm -rf; find . -name '.svn' -print | xargs rm -rf; tar cvf ../artemis_compiled.tar artemis) (cd tar_build; find . -name 'CVS' -print | xargs rm -rf; find . -name '.svn' -print | xargs rm -rf; tar cvf ../artemis_compiled.tar artemis)
jar : all artemis.jar jar : all artemis.jar
...@@ -280,14 +280,14 @@ artemis.jar : $(CLASSES) ...@@ -280,14 +280,14 @@ artemis.jar : $(CLASSES)
rm -rf META-INF/MANIFEST.MF; \ rm -rf META-INF/MANIFEST.MF; \
done; \ done; \
fi; \ fi; \
cp -R ../lib/LICENSE.Apache ../uk ../nsdb ../type ../seqdb ../etc ../images ../lib/j2ssh/j2ssh.properties \ cp -R ../lib/LICENSE.Apache ../uk ../org ../nsdb ../type ../seqdb ../etc ../images ../lib/j2ssh/j2ssh.properties \
../images/PSUlogo.gif ../images/icon.gif ../images/helix.gif ../images/sanger-centre.gif ../README ../artemis_sqlmap . ../images/PSUlogo.gif ../images/icon.gif ../README ../artemis_sqlmap .
find jar_build -name '*.java' -print | xargs rm -f find jar_build -name '*.java' -print | xargs rm -f
find jar_build -name '.svn' -print | xargs rm -rf find jar_build -name '.svn' -print | xargs rm -rf
cd jar_build; \ cd jar_build; \
rm -rf META-INF/MANIFEST.MF; \ rm -rf META-INF/MANIFEST.MF; \
echo "Main-Class: uk.ac.sanger.artemis.components.ArtemisMain" > manifest-art; \ echo "Main-Class: uk.ac.sanger.artemis.components.ArtemisMain" > manifest-art; \
jar cmf manifest-art artemis.jar images/PSUlogo.gif images/icon.gif images/helix.gif images/sanger-centre.gif README etc \ jar cmf manifest-art artemis.jar images/PSUlogo.gif images/icon.gif README etc \
artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \ artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \
echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw" > manifest-circular; \ echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw" > manifest-circular; \
jar cmf manifest-circular DNAPlotter.jar images/PSUlogo.gif README etc \ jar cmf manifest-circular DNAPlotter.jar images/PSUlogo.gif README etc \
...@@ -295,13 +295,13 @@ artemis.jar : $(CLASSES) ...@@ -295,13 +295,13 @@ artemis.jar : $(CLASSES)
echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView" > manifest-bamview; \ echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView" > manifest-bamview; \
jar cmf manifest-bamview BamView.jar etc uk org net/sf com/ibatis; \ jar cmf manifest-bamview BamView.jar etc uk org net/sf com/ibatis; \
echo "Main-Class: uk.ac.sanger.artemis.components.ActMain" > manifest-act; \ echo "Main-Class: uk.ac.sanger.artemis.components.ActMain" > manifest-act; \
jar cmf manifest-act act.jar images/PSUlogo.gif images/icon.gif images/helix.gif images/sanger-centre.gif README etc \ jar cmf manifest-act act.jar images/PSUlogo.gif images/icon.gif README etc \
artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \ artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \
rm -f etc/log4j.properties; \ rm -f etc/log4j.properties; \
jar cmf manifest-art artemis_mac.jar images/PSUlogo.gif images/icon.gif images/helix.gif images/sanger-centre.gif README \ jar cmf manifest-art artemis_mac.jar images/PSUlogo.gif images/icon.gif README \
uk nsdb type seqdb LICENSE.Apache artemis_sqlmap uk org/gmod nsdb type seqdb LICENSE.Apache artemis_sqlmap
clean : clean :
-rm -rf *.html artemis.jar seqdb nsdb type org resources uk/ac/sanger/jcon/ jar_build -rm -rf *.html artemis.jar seqdb nsdb type resources uk/ac/sanger/jcon/ jar_build tar_build artemis_compiled.tar
-rm -rf TAGS* *.o -rm -rf TAGS* *.o
-find . -name '*.class' -print | xargs rm -f -find . -name '*.class' -print | xargs rm -f
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