fixes to add note

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2151 ee4ac58c-ac51-4696-9907-e4b3aa274f04

uk/ac/sanger/artemis/editor/DataViewInternalFrame.java

@@ -273,9 +273,9 @@ public class DataViewInternalFrame extends JInternalFrame
         if(line.startsWith("/similarity="))
         {
           if(note == null)
-            note = new StringBuffer("\n/note=\"Similar to");
+            note = new StringBuffer("\n/note=\"Similar to ");
           else
-            note.append(", and to");
+            note.append(", and to ");
 
           StringTokenizer tok = new StringTokenizer(line,";");
           String type = tok.nextToken();
@@ -290,11 +290,18 @@ public class DataViewInternalFrame extends JInternalFrame
 //        ind1 = id.indexOf(":");
           id = id.substring(ind1+1).trim();
 
-          note.append(tok.nextToken());
+          String next = tok.nextToken().trim();
+          if(next.endsWith("."))
+            next = next.substring(0,next.length()-1);
+
+          note.append(next);
           note.append(tok.nextToken().toLowerCase());
-          note.append(" "+id);
 
           String length = tok.nextToken().trim();
+          if(!length.startsWith("length"))
+            note.append(" "+length.toLowerCase());
+          note.append(" "+id);
+
           while(!length.startsWith("length"))
             length = tok.nextToken().trim();
 

uk/ac/sanger/artemis/editor/HitInfo.java

@@ -160,7 +160,8 @@ public class HitInfo
       return;
 
     ind1 = ind2;
-    ind2 = header.indexOf("(",ind1);
+    ind2 = header.lastIndexOf("(");
+
     if(ind2 > -1)
       desc = "";
 //    desc = header.substring(ind1,ind2).trim();
@@ -174,6 +175,7 @@ public class HitInfo
     else
       return;
 
+    
     StringTokenizer tok = new StringTokenizer(header.substring(ind2+1));
     try
     {