use ssh

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2876 ee4ac58c-ac51-4696-9907-e4b3aa274f04

etc/run_blastp.sanger

@@ -6,7 +6,7 @@
 # to customise this script see the function called run_one_prog below
 
 
-RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_blastp.sanger,v 1.2 2005-06-09 13:06:56 tjc Exp $"
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_blastp.sanger,v 1.3 2005-06-15 19:12:04 tjc Exp $"
 
 PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
 
@@ -68,7 +68,7 @@ run_one_prog () {
 #      rsh babel "cd $WDIR; lsrun -R 'select[blast && mem > 500] rusage[r1m=1:mem=500]' -v \
 #                           blastwrap.pl $EXEC -d $DATABASE -i $INPUT_FILE -p blastp \
 #                           $EXTRA_ARGS >! $OUTPUT_FILE"
-      rsh babel "bsub -q  longblastq -o $OUTPUT_FILE -e ${PROG}_errors.new -I flexi_blast.pl -p $DATABASE $INPUT_FILE $EXTRA_ARGS"
+      ssh babel "bsub -q  longblastq -o $OUTPUT_FILE -e ${PROG}_errors.new -I flexi_blast.pl -p $DATABASE $INPUT_FILE $EXTRA_ARGS"
     else
     # add/change the flags to suit your site:
 #      lsrun -R 'select[blast && mem > 500] rusage[r1m=1:mem=500]' -v \

etc/run_fasta.sanger

@@ -6,7 +6,7 @@
 # to customise this script see the function called run_one_prog below
 
 
-RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta.sanger,v 1.1 2005-02-21 11:51:10 tjc Exp $"
+RCS_HEADER="$Header: //tmp/pathsoft/artemis/etc/run_fasta.sanger,v 1.2 2005-06-15 19:08:48 tjc Exp $"
 
 PROG=`echo $RCS_HEADER | sed 's/.*run_\(.*\),v.*/\1/'`
 
@@ -187,7 +187,7 @@ then
       WDIR=`pwd`
       export WDIR
       CMD=`echo $PERL_PROG`
-      rsh babel "cd $WDIR; perl -w -e '$CMD' \"$1\" \"$EXPANDED_DATABASE\" \"$PWD\""
+      ssh babel "cd $WDIR; perl -w -e '$CMD' \"$1\" \"$EXPANDED_DATABASE\" \"$PWD\""
    else
       perl -w -e "$PERL_PROG" "$1" "$EXPANDED_DATABASE" "$PWD"
    fi