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Commit 1d68f817 authored by tjc's avatar tjc
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add phase to getResiduesByUniqueName

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@6321 ee4ac58c-ac51-4696-9907-e4b3aa274f04
parent cbb32f70
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...@@ -81,6 +81,7 @@ ...@@ -81,6 +81,7 @@
<result property="featureLoc.fmin" column="fmin" nullValue="-1"/> <result property="featureLoc.fmin" column="fmin" nullValue="-1"/>
<result property="featureLoc.fmax" column="fmax" nullValue="0"/> <result property="featureLoc.fmax" column="fmax" nullValue="0"/>
<result property="featureLoc.strand" column="strand" nullValue="0" /> <result property="featureLoc.strand" column="strand" nullValue="0" />
<result property="featureLoc.phase" column="phase" nullValue="0" />
</resultMap> </resultMap>
<resultMap id="map-similaritymatch" class="Feature" <resultMap id="map-similaritymatch" class="Feature"
...@@ -352,7 +353,7 @@ ...@@ -352,7 +353,7 @@
<select id="getResiduesByUniqueName" parameterClass="java.lang.String" <select id="getResiduesByUniqueName" parameterClass="java.lang.String"
resultMap="map-feature-residues"> resultMap="map-feature-residues">
SELECT substr(residues, fl.fmin+1, fl.fmax-fl.fmin) AS residues, SELECT substr(residues, fl.fmin+1, fl.fmax-fl.fmin) AS residues,
seqlen AS seqLen, fl.fmin, fl.fmax, fl.strand seqlen AS seqLen, fl.fmin, fl.fmax, fl.strand, fl.phase
FROM featureloc fl FROM featureloc fl
LEFT JOIN feature f ON fl.srcfeature_id=f.feature_id LEFT JOIN feature f ON fl.srcfeature_id=f.feature_id
WHERE fl.feature_id=(SELECT feature_id FROM feature WHERE uniquename=#value#); WHERE fl.feature_id=(SELECT feature_id FROM feature WHERE uniquename=#value#);
......
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